| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4279 |
|---|
| Symbol | |
|---|
| ID | 8335633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4853312 |
|---|
| End bp | 4854484 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644957382 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_003114984 |
|---|
| Protein GI | 256393420 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.141771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTGGG GTGCCGGCTC GATCTCCGGG GACATGACCC GCACCGCGGT GCTCGCGCTG
CTGGCGCGGC GCGGTCCGCT CAGCCGCGCG CAGATCGCCG AGATGCTGGA GCTGAGCCCT
GCGACGATCA CCCAGGGCAC CCGGCGACTG CTCGCTGAAG GACTGCTGGT CGAGGAGGCG
CCGCGACCGT CGGCGGGCGG CGGCGGACGT CCCTCGGTCC CGCTGTCGCT GGTCCCCGGA
TCGGCGCACA CCATCGGCAT CCAGGTCGCG CACGAGCACG TCACCGGCGT GACCAGCCGC
CTGGACGCCA CCGTCGTGCA CAGCTTCCGG CACGCCTTCG ACCCGGCCTC CCCGGACGCG
GTCGAGACTC TCACCGCCCT GATCCGCTCG GAGATCGAGG AGATCGAACG GCGCGGACTG
CCGCTGGCGG GAGTCGGCGT GGCGGTGCCC GGCATCGTCG AGCCGGAGAC CGGAACCCTG
AGCATGTCGG TGCGGCTGGG CTGGACCGGT CTGCCGCTGG CGGCGCGGCT GCGCGAAGCG
CTCGGCGTGC CGGTGTTCGT CGACAACGAC ATCAGCGCGG TGACCGCCGC CGAACGCCTC
TACGGTCCGG GCGCCGACGA GGCCGACTTC CTGCTCGCCG CGATCGGCCA GGGCATCGGG
CTGGGCATGG TCCTGGACGG CGCGCCCTAC CGAGGCGCCG CAGGAGCCGC CGGCGAGTTC
GGACACATGC CGGTCCAGCC GGATGGACCG CAATGCGTCT GCGGCAACCG CGGCTGCCTG
GAATCGCTGG TCAGCACCGA GGCCTTGCTC CGGACAGCCC ACGAAGCCGG CATCCTGCCC
GCCGAATCAG ACCTCGACGA CCTCGGCACG GCCGCCCGCC ACGGCGACCC GGCCGCCGTC
CAGCTGCTCC ACAACGCCGC CACCCTCCTC GGCCGCGCAC TGGCCGGCGT GGTCAACCTG
CTCGGCCCGC GCAGCGTCAT CATCATCGGC GAGATCACCG CCATCTGGGA CCTCCTCGAC
GACCCCCTGC ACGAAGCACT CCTGGACCAC CTCCTCCCCG CCGTCCGCGA CACCCGCATC
GAAGTCCGGC CGTGGCACGA TGAGGTGATC GCAGCCAGCG CCGCCCGGGT GGTGCTGGCG
GCGCCGCTGG CCGCGCCTCG GCAGCGGGGA TGA
|
|---|
| Protein sequence | MRWGAGSISG DMTRTAVLAL LARRGPLSRA QIAEMLELSP ATITQGTRRL LAEGLLVEEA
PRPSAGGGGR PSVPLSLVPG SAHTIGIQVA HEHVTGVTSR LDATVVHSFR HAFDPASPDA
VETLTALIRS EIEEIERRGL PLAGVGVAVP GIVEPETGTL SMSVRLGWTG LPLAARLREA
LGVPVFVDND ISAVTAAERL YGPGADEADF LLAAIGQGIG LGMVLDGAPY RGAAGAAGEF
GHMPVQPDGP QCVCGNRGCL ESLVSTEALL RTAHEAGILP AESDLDDLGT AARHGDPAAV
QLLHNAATLL GRALAGVVNL LGPRSVIIIG EITAIWDLLD DPLHEALLDH LLPAVRDTRI
EVRPWHDEVI AASAARVVLA APLAAPRQRG
|
|---|
| |