Gene Caci_3985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3985 
Symbol 
ID8335338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4518526 
End bp4519131 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content69% 
IMG OID644957099 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003114702 
Protein GI256393138 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00934681 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.27393 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCG CCCTGAACGG CTGCTGCGGC AATCCGATTC CGAACCGGTT CCGAACCTTC 
CCCGTGGGCG GAACACAGGA GAGTCCTGAT CCGGGCAGCG GTCTCGGGTC CGGCGAGCGC
TTCGAGGGCC AGGTGCGGGA GTTGGCTCGT CCGATGGGCG AGCAGGCATA TCGCATTCTC
GGCGACCGGT CGCTGGCCGA GGAGGTCGTG CAGGAGGCGT TGCTGCAGAT GTGGCTGCAT
CGCGACGGCT TCGACTCGGC CCGCGGCTCG CTCGGGGGAT GGGCGCTGGC CATCGTCCGC
CATGTGGCGG TCGACCGCGT ACGCAGTGAG CAGGCCGCGG CACGGCGCGA GGCGTTGTTC
GCCGTCCGCC ACGCGGCCAC CCCGTACGAC GAAGTCGTGG ACGCGGTCGA GCGCGTCCAG
GACTACGCGC GGATCCGCAC GCTGTTGGAC GACCTCACCG CGGTGCAACG TGAGGCGATC
CGCCTGGTCT ATTTCGACAA CCTGAGTGCC GCTCAAGCCG CCGAGCGCCT CGGAATCCCC
GTGCCGACGC TGCGAACCCG TCTCCGTGAC GCACGCCAGG CGCTGGAGTT GATACTCGGC
TCCTGA
 
Protein sequence
MAAALNGCCG NPIPNRFRTF PVGGTQESPD PGSGLGSGER FEGQVRELAR PMGEQAYRIL 
GDRSLAEEVV QEALLQMWLH RDGFDSARGS LGGWALAIVR HVAVDRVRSE QAAARREALF
AVRHAATPYD EVVDAVERVQ DYARIRTLLD DLTAVQREAI RLVYFDNLSA AQAAERLGIP
VPTLRTRLRD ARQALELILG S