| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3942 |
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| Symbol | |
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| ID | 8335295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 4478816 |
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| End bp | 4481083 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644957063 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003114666 |
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| Protein GI | 256393102 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.058875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0427407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAGTC ACGACAACAC GCAGTCGGAG ATGAGCGGTT CGGCGCGCGA CGTCATACAG
GCGCGGGACA TCAGCGGCGA CATCCACTTC CACTCCGCGA CGCGAGCACC GGCACCAACT
CCGAGACAGC TGCCGGGGGA CGTGCGAGGT TTCGTGAACC GGGTGGCCGA TCTCAAAGCA
CTCGACGACG CGTTGGCGCC GGCACCCGAG GCCGGCAGCG AGGAAGGAGT GGCAGGCACT
CAGGGTCCTG TTATGGTCGT TTCCGGTACG GCAGGCGTAG GCAAGACCTC GCTGGCGCTG
CACTGGGCAC ACCGAAACCG CGATCGCTTC CCCGACGGCC AGCTGCACGC GAATCTACAC
GGCTTCGATC AAGGATCACC GGCCGCACCG GCAGATATCC TCGGCCACTT CATCGAGGCG
CTCGGGGTTC CTGCGGCTAT GACTCCAAGT GACACCGATG CACGGGCCGC GCTTTTCCGA
TCGCTGGTCG CGGACAAGCG ACTGCTGATC GTGTTGGACA ATGCCGCCGA CAGTGAGCAG
GTCAGACCCT TGCTGCCCGG TGCGGCGGGC TGCGTCACCC TCATCACGTC GCGCAGTCGG
CTGTCCGCTC TCATCGCCAG GGAGGGTGCT GCCCGAATAA CCGCCGACGT CTTCGCCGAA
CACGACGCGG TCATGCTGCT GACCACCGCG ATCGGCGCTC AGCGCGCCGA CGACGAGGCG
GACGTCGCGG AGTTGGCCGG CTTGTGCGCC AGGCTGCCTC TGGCCTTGCG GATCGCCGCC
GAACGCGCCG CTGCCCGGCC CCGGATGCCG TTGACCGACC TCATCGCGGA TCTGCGCAAC
GAATCCTCGA TGTGGGACGC CCTGTCCTCC GAGGACGCGG CGGAGGCGGA CGCGGTGCGG
ACGGTGTTCG CATGGTCCTA CCGCGCACTG CGGGAACCGG CGTCGCGGAT GTTCCGGCTG
CTGGGCCTGC ACCCGACCGC CGAGTTTGCC GTCGGTGCGG CGGCCGCGCT GGCCGGCGTA
CAACCACGCG CCGCCGCACG ATTGCTCGAC GATCTGGCTG CCGCACACCT GATCACGCAG
CTCGACCGGG ACCGATTCCA GGTCCACGAC CTGCTGCACG CCTACGCCGC CGACCAAGCA
GACGAGGCGG ACACCGACCA GGAGAATGTC CAAGCCCTGG GCCGCTTGCT GGACTGGTAC
GTCCAGGGCG CCGAGGCCGT CCGTGCCTCG GCGCCCTATG AGCAGGCCGC GCATCACGCG
CCGGTCGACG CCCCCGACTC CGCCGTGGCA CCTCCGTCGT TCTCCGACTA TCCATCGGCC
CTGTCCTGGT TCCGTACTGA ACGCGCGAAC CTGATCGAGG CGGTGCGCCT GGCGGAGCGA
CTCGGACTCG ACCGCCATGC ATGGCAGCTT CCTGCAGCCT TGAGCTTCGT ATACGCCGAC
AACGGATACT TCGACGACTG GTTCGTGATC ACCCGTCCCG GCCTTGCCGC CGCCAAACGC
AGCGGCGACC TCGTCGGTCA AGCCGCGCTG CTCGCCTCCC TAGGAATGGC GTGCCGTCAA
TCACACCGCC TCGATGAGGC CTCCGGGTAC TACAACGCCG CCCTCGCGAT CCACGAGCAA
CGCGAAGATC TCCACGGACA AGCCTGGCTT CTGGACCTCA TCGGGTTCCT GCAGCATGAC
GCGGGTGATT TCGAAGCAGC CATGAACACG TTCCAAGCCT CGATCGACCT GTGCCGGACC
GAGCACCTAA ACAGTTTCCT GGGCTACCCC GTCGAGGGAA TCGGATGTGT CCGGCTCGCG
ACCGGGGACG CCGACGAGGC GCTCGCAGCA TTCCAACAGT CGCTCATGCT GCATACAGAC
GCCGGCGACG CCGTCGGTCG CTTCCACGTT CTCATCTCCA TCTGCAACAC CCAGCTCAGC
ACCGGGCATG CCTCCGAAGC TGAGCGCTAC GCGGCACTGG CCATCGAAGT CGCCGACGAA
CTGGACAATC GTGGTTTTGA AGGCGCTGCG TTCATCGCAC GCGCCAGATC CCTACAGGCG
GTCGACCGCG CCGACGAGGC CCTGGCCTAC TACCAGCGTG CCGCAGTGAT CCAGCGCACG
CTCGGCGACC GAGTGAACGA GGCCCGGGCC ATCGCTGGCG CGGCGAAGGC ATACCGCAGC
TTGGGGCGCC AGGATGAAGC CGCTGACTTC GAGCGCTGGG CTTCATCACT GCACGCTGCG
CTGGGACTGC CTATCGAGGG CCTATCCAAT GGTGCCGAGC TCGTCTAG
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| Protein sequence | MSSHDNTQSE MSGSARDVIQ ARDISGDIHF HSATRAPAPT PRQLPGDVRG FVNRVADLKA
LDDALAPAPE AGSEEGVAGT QGPVMVVSGT AGVGKTSLAL HWAHRNRDRF PDGQLHANLH
GFDQGSPAAP ADILGHFIEA LGVPAAMTPS DTDARAALFR SLVADKRLLI VLDNAADSEQ
VRPLLPGAAG CVTLITSRSR LSALIAREGA ARITADVFAE HDAVMLLTTA IGAQRADDEA
DVAELAGLCA RLPLALRIAA ERAAARPRMP LTDLIADLRN ESSMWDALSS EDAAEADAVR
TVFAWSYRAL REPASRMFRL LGLHPTAEFA VGAAAALAGV QPRAAARLLD DLAAAHLITQ
LDRDRFQVHD LLHAYAADQA DEADTDQENV QALGRLLDWY VQGAEAVRAS APYEQAAHHA
PVDAPDSAVA PPSFSDYPSA LSWFRTERAN LIEAVRLAER LGLDRHAWQL PAALSFVYAD
NGYFDDWFVI TRPGLAAAKR SGDLVGQAAL LASLGMACRQ SHRLDEASGY YNAALAIHEQ
REDLHGQAWL LDLIGFLQHD AGDFEAAMNT FQASIDLCRT EHLNSFLGYP VEGIGCVRLA
TGDADEALAA FQQSLMLHTD AGDAVGRFHV LISICNTQLS TGHASEAERY AALAIEVADE
LDNRGFEGAA FIARARSLQA VDRADEALAY YQRAAVIQRT LGDRVNEARA IAGAAKAYRS
LGRQDEAADF ERWASSLHAA LGLPIEGLSN GAELV
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