Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3897 |
Symbol | |
ID | 8335250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4420401 |
End bp | 4421957 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644957023 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003114626 |
Protein GI | 256393062 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0429353 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCGC TCGATCTTTC ACAGTCCCCG CGCCGCTGGC CGGCCCTCGC GGCCCTCACC CTCAGCGTCC TGATCGTCGG CCTCGACGGC ACCGTCATCA ATGTGGCCCT GCCGACGATC GCGGGCGATC TGCACACTGA CAGCGCCCAA CTGCAGTGGA TCAGCGGCGG CTACCTGCTC GCTCTGTCAG TGGCGATGCT TCCGGTCGGT CTGCTGGGCG ACCGCTATGG CCACCGGCGA TTGCTGCTCT CCGGCATAGC CGTGTTCGGC GCCGCTTCCC TGGTCGGCTC ACTGGCCGAC TCGCCGACCG CGGTCATCGC GGCGCGCGCG GTCCTGGGTC TGGGCGCCGC CGCGATCCTG CCGTTGTCGA TGGCGATCCT GCCGCGGGTC TTCAGCAAGG ACGAGCAGCC CCGGGCCATC GCCGTCTGGA CCGCCGCCAC GGCGCTCGGC ATGCCCGTCG GACCGGTGGT CGGCGGCTGG CTGCTCAACC ACTTCTGGTG GGGCTCGGTC TTCCTGTTCA ACGTCCCGGT CGCCGTTGTG GCGCTGGCTG CCGGCTTGTG GCTGCTGCCC CGCGATGCCG AACGGACGTC GGCCGCGCCG CCGTTCGACA CCCTCGGCGC CCTGCTGGGC GGCCTCGGCA TCACCGCGCT CGTCTATGGC ACGATCCTGA TCTCCGAGGA CGGGTGGACT GCTCCGTCCG TCCTGGCCTC GCTGTCCGCC GCTGCCGCGC TGCTGGCCGG GTTCGTCGTC CGCGAGCGCC GTTTCCCGCA TCCGCTGGTC GACTTCGCCC TGTTCGGCGA CCGCCGCTTC CGGTGGGGGA CGCTGATCGC GGTCTTCGTC AACTTCGCGG TGATGGGGAT CTTGTTCGTG GTGCCGCAGT ACCTCCAGTC CGTGCTGGGG AACGACGCCT TCGGCACAGG TATCCGGGTG CTGCCGCTCA TCGGCGGGCT GATGCTGTCG GCGGCGCTCA GCGAATTCTT GCTGCCCAGG CTCGGCGTCC GGCTGGTCGT CACTACGGGC CTGCTGGTGC TCGCGGCCGG CGTGCTGTTC GGCGCCACCA CCGGCGCCGC CGACGGCTAC GGCTTCGCCG CCGGCTGGCT GGGCTTGACC GGCCTCGGCT TCGGGCTCGC AGTGGTGCCC GCCACCAGCC TGGTCCTGGG GACGCTGCCC GACCACGGAA CCGGATCCGG CACCAGCCTG TTGGAAACCA TCCAGCAGCT CGGGTCGGCG TTGGGCGTCG CGGGCCTCGG CAGCCTGCTC AGCTACGGCT ACCTGGCCCG GCTGCACACC GGGCGGCTGC CGACATCGGA GGCCGACGCG GCACGCGACT CGGTGTCCGA CGCCGACGCC CTCGCGGGGC AGCTGCACGA CGCCGGACTT GCCGTGAACG CGCACGCGTC CTTCGTCCAC GGCATGAGCC TGGTCCTCCT CGTCTGCGGC GTGATCGCCC TGCTCGGCGC CGGACTGGCC GCCGCCTTCC TCCCGCGGCA CGCCGGCGCC CCGGGCGCCG GCCAGGTTTC CGGAACGGTG GCCGAACCCG CAGAATCGAT CGCATGA
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Protein sequence | MPALDLSQSP RRWPALAALT LSVLIVGLDG TVINVALPTI AGDLHTDSAQ LQWISGGYLL ALSVAMLPVG LLGDRYGHRR LLLSGIAVFG AASLVGSLAD SPTAVIAARA VLGLGAAAIL PLSMAILPRV FSKDEQPRAI AVWTAATALG MPVGPVVGGW LLNHFWWGSV FLFNVPVAVV ALAAGLWLLP RDAERTSAAP PFDTLGALLG GLGITALVYG TILISEDGWT APSVLASLSA AAALLAGFVV RERRFPHPLV DFALFGDRRF RWGTLIAVFV NFAVMGILFV VPQYLQSVLG NDAFGTGIRV LPLIGGLMLS AALSEFLLPR LGVRLVVTTG LLVLAAGVLF GATTGAADGY GFAAGWLGLT GLGFGLAVVP ATSLVLGTLP DHGTGSGTSL LETIQQLGSA LGVAGLGSLL SYGYLARLHT GRLPTSEADA ARDSVSDADA LAGQLHDAGL AVNAHASFVH GMSLVLLVCG VIALLGAGLA AAFLPRHAGA PGAGQVSGTV AEPAESIA
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