Gene Caci_3648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3648 
Symbol 
ID8335001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4081725 
End bp4082792 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content73% 
IMG OID644956788 
ProductRNA polymerase factor sigma-70 
Protein accessionYP_003114391 
Protein GI256392827 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0671959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACA CGAACGCCCC GCCCGTGCGG TCCCCGCGAG CCGACGCGCA GTGGACTGAT 
CCGGCGGCGC CGCGCGACGA CGACGAGTTC GTCCGCCGTG CCGACCCCTA CCGGCGCGAG
CTGCTGGTGC ACTGCTACCG CATGCTCGGC TCGGTGCACG ACGCCGAGGA CCTCGTGCAG
GAGACGTTCC TGCGCGCGTG GCGCGGCTAC GACCGGTTCG AGGGCCGCTC CTCGCTGCGC
ATCTGGCTCT ACCGGATCGC GACCAGCGCC TGCCTGACCG CCCTGGAGAA CCGGAGTCGG
CGGGTACTGC CGACGGGTCT GGGCGCCCCG GAGAAGGACG CCGAACGTCC CCTGCTGACC
GTCGCGGGCT CGGAGGTGCA GTGGCTCCAA CCGCTGCCGG ACGCCCTGGC GAGCGACCCG
GCGGCGATCG TGGCGGTGCG GGATTCGGTG CGTCTGGCGT TCATCGCCGC GTTGCAGCAC
CTGTCGGCCA AGCAGCGCGC GGTGCTGATC CTGCGCGACG TGATGGACTG GCACGCCGCC
GAGGTCGCGG ACCTGCTGGA CACCACGACG ATCGCGGTGA ACAGTGCACT GCGACGCGCC
CGGGCCCAGC TGGAGAAGGC CGCGCCGAGC CACGACGAGC TGACCGAGCC GGACGACCCG
CGCCGCCGGG ACCTGCTGCA TCAGTACACG ACCGCCTTCG AGAACGCCGA CGTCCCGGGG
CTCCTGCGGC TGCTGCGCGA CGACGTCGTG CTGGAGATGC CGCCGAACCT GGCGTGGTTC
GACGGCCGCA CGGCGGTCGG GACGTTCCTG GGCGCGAACG TGCTCGGCAG GCGGGCGTTC
ACGATGGTCA CGACCGCGGC GAACGGACAG GCGGCCGCCG CCGGCTACCT GGCCGGGCGG
GACGGGCGCC GGCACGCGCA CGCCATCCAG GTGCTGACCG CCACCTCCTC GGGCATCTCG
CACATCGTCT CGTTCAACGA CCCGGGCCTG TTCGCCGCCT TCGGTCTGCC CGCCGTCCTG
GACGGTGCGC AGCACGGCGT GGCCAGTGCC GGACCATGGC GGGGCTGA
 
Protein sequence
MIDTNAPPVR SPRADAQWTD PAAPRDDDEF VRRADPYRRE LLVHCYRMLG SVHDAEDLVQ 
ETFLRAWRGY DRFEGRSSLR IWLYRIATSA CLTALENRSR RVLPTGLGAP EKDAERPLLT
VAGSEVQWLQ PLPDALASDP AAIVAVRDSV RLAFIAALQH LSAKQRAVLI LRDVMDWHAA
EVADLLDTTT IAVNSALRRA RAQLEKAAPS HDELTEPDDP RRRDLLHQYT TAFENADVPG
LLRLLRDDVV LEMPPNLAWF DGRTAVGTFL GANVLGRRAF TMVTTAANGQ AAAAGYLAGR
DGRRHAHAIQ VLTATSSGIS HIVSFNDPGL FAAFGLPAVL DGAQHGVASA GPWRG