Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3539 |
Symbol | |
ID | 8334892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3952831 |
End bp | 3953637 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644956682 |
Product | two component transcriptional regulator, winged helix family |
Protein accession | YP_003114285 |
Protein GI | 256392721 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.224989 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAACG AGCTTGTCCG GCCGGGCACC GCGATCGCGC CCCACGACCG GACGATCCTC CCGACACACC CCGCGCGGCG GGCCGTACCC GATCCGCCCG GCCGCGCCCC GGTGCTCTAC TCCTCGCTGG TCCGGCCCGC GCTGCGGATC CTGGTCGCCG AGCCGGACCC GGACAGCGCC GAGCAGCTTC TCAGGAAGCT GCGACGCCAG GGGCACCGGG CCGAGGTGGT GCACACCGGG GACAAGGCGC TGATCGAGTT CCCCTCGGCG GACCTGGTGC TGCTCGATCT GGAACTGCCC GACGTGGACG GGCTGGAGAT CTGCCGCGGC ATCCGGGCGG TCAGCGACGT GGCGATCATC ACCGTCTCCG AGCGCGCCGA GGAGATCGAC TGCGTGCTCG GCTTACAGGC CGGGTCCGAC GACTACCTCG TCAAACCCTA CGGCTTCCGC GAGCTGATGG CGCGGATCGA CGCGGTGATG CGCCGCATCC GGCCCGGCGC CGTCCGGGAC CGGGTGATCG CGCACGGCCG GCTGCTCATC GACGCCGGCT GCCGCGAGGT CCGGATCGGC GGGCAGGTGG TCGGCGTCAC CCGCAAGGAG TTCGACCTGC TGCTCCTGCT CGCCTCCCAG CCCGGCACGG TGATCTCCCG GCAGCAGATC ATGTCGCAGA TCTGGCAGGA CGTCTGGTCG GAGTCGACAC GGACCATCGA CACCCATGTC AGCAGTCTGC GATCCAAGCT CGGATCAGGG TCCTGGATCG TCACCGTCCG CGGCGTCGGG TTCCAGCTGG GGACCGCCCC GGACTAG
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Protein sequence | MANELVRPGT AIAPHDRTIL PTHPARRAVP DPPGRAPVLY SSLVRPALRI LVAEPDPDSA EQLLRKLRRQ GHRAEVVHTG DKALIEFPSA DLVLLDLELP DVDGLEICRG IRAVSDVAII TVSERAEEID CVLGLQAGSD DYLVKPYGFR ELMARIDAVM RRIRPGAVRD RVIAHGRLLI DAGCREVRIG GQVVGVTRKE FDLLLLLASQ PGTVISRQQI MSQIWQDVWS ESTRTIDTHV SSLRSKLGSG SWIVTVRGVG FQLGTAPD
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