| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3414 |
|---|
| Symbol | |
|---|
| ID | 8334767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3765189 |
|---|
| End bp | 3769412 |
|---|
| Gene Length | 4224 bp |
|---|
| Protein Length | 1407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644956558 |
|---|
| Product | Kelch repeat-containing protein |
|---|
| Protein accession | YP_003114161 |
|---|
| Protein GI | 256392597 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4934] Predicted protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.377722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACATCC CCTTCCCTCC GCGCCTGGGC AAGATCGTCG CCCTGGCCGC CGCTCTCGCC
TTGACGACCG GGGTCGGCAG CGCCGCTGCC GCCGCGGGTC AGGCGAGTTC GGTGCGAACC
ACCGGCGCCG TCAGCGCCAC GAGCACTGCC GGCACAGCGC GCGCAGAAGG CGCCGCTTCG
GCCGCCGCCG CCAAGCCCGG CAGCCTCACC AGCGCCAAAC CCAACGCCCG GTCGGTCTGT
CCGCCGGCCG CCAAGGGTGC CTTCACCTGC TTCGCATTGC AGCGCACTGA CATAGTCGGC
GCCACCGGCC TGGCCAAGGC CGACGCCACC CCCTCCGGTT TCGGTCCCTC GGACCTGCTC
AGCGCGTACA ACCTGCCGGC CGACGGCGGC GCCGGGGCGA CGGTCGCCAT CGTCGACGCC
TACGACGACC CGAACGCCGA GGCGGACCTG GCGCTGTACC GGACCCAGTT CGGGCTCCCG
GCGTGCAGCA CCGCCAACGG CTGCTTCAAG AAGGTCGACG AGACCGGCGG CACCAGCTAC
CCGACGCCGG ACTCCGGCTG GGCCGGGGAG ATCTCGCTGG ACCTGGACAT GGTCTCCGCG
ATCGCCCCGC GCGCGCACAT CATCCTGGTC GAGGCCACCA CGCCGAACTT CACCGACCTG
GGCGCGGGCG TCGACGAGGC GGTGGCGCTC GGCGCCGGCT ACGTCTCGAA CTCCTACGGC
TCGAACTACA CCTCGACCCC GGGCAGCGGC GAGGACCCGT CCGAGCTCAC CTCGATGGAC
CCGTACTACA ACCACCCGGG CGTGGCGGTT CTGGCCAGCA CCGGCGACGA CTCCTACGGC
GTGGCCTACC CGGCCGCCTC GCAGTACGTC ACCTCCGTCG GCGGCACCTC GCTGGTCAAG
GACACCAGCA CGCGCGGCTG GTCGGAGTCG GTGTGGTCCA ACTCCTACGG CGGTCCGGGC
TCGGGCTGCT CGCTCTATGA GCCCAAGCCG AGCTTCCAGA AGGACACCGG CTGCGCGATG
CGCGCCCTGG CCGACGTGTC CGCGGTCGCC GACCCGGCCA CCGGCGTGTC GGTCTACGAC
ACCTACCAGG AGACCGGCTG GCAGGTCTAC GGCGGCACCA GCGTCTCCAC GCCGCTGCTC
GCCGGGGTCT ACGCCGACGC CGGCGCGCCG GCCGCCGGGA CGTACCCGAA CGCCTACCCC
TACGCCAAGC CCTCCGCCCT CAACGACGTG ACTCAGGGCT CGACGAGCAC CTGCACCCCG
TCGTACCTGT GCACCGCCGG TCCCGGCTAC GACGGCCCGA CCGGTCTGGG CACGCCCAAC
GGCCTCACGG CGTTCACCAG CGGTCCGCAC GGCATCGTGG CCGGCAAGGT CACCGACGGC
ACCAACCCGG TCGCCGGCGC GAAGGTCTCT GCGGGGACCT CGAGCACGAC GACCGCCGCC
GACGGCAGCT ACACGCTGGA CGTGCTCCCC GGGACCTACA CCGTCGGCGT CAGCGCCTTC
GGCTACGCCG ACCAGTCGGT CGACGGCGTC GTGGTCGCCG ACGGCGCGAC CGTCGCGGAG
AACTTCACGC TCGCGGCCGT GGCCCGGGTG GCGGTCACCG GCAAGGTGAC CGACGGCTCC
GGCCAGGGCT GGCCGCTGTA CGCGACGATC TCGGTGGACG GCATGCCGGG CGGTCCGGTG
TACACGAACC CGAAGACCGG CGCGTACACG ATCCAGCTGC CGGTGAACCA GACCTACCAG
CTGCACACCA CCGCGGCGTA CCCCGGGTAT CAGGCCACGG ACACGCCCGT GACCGTGGGC
GTCTCGGCGG TGACCCAGCC GATCTCGGTG AAGGTGGACC CCGCGACCTG CACGGCCGCC
GGCTACCGGA TCGGCCAGGA CGGTCTGTAT CAGACCTTTG ACGGCACCAC GGCGCCGACC
GGCTGGACCG TCACCAACAA CACCGCCTCC GGCGGCTGGG AGTTCGACGA CCCGGGCAAG
CGGGGCAACG TCTCCACCGG GACCGGCGGG TTCGCGATCG TCGACAGCGA CTTCCTCGGC
GTGAGCAAGT CGGAGGACTC GTACCTGACC TCACCGGTCA CCGACATGTC CGCGGTCGCC
ACGCCTGAGC TGGACTTCGC GACGTACTAC AAGCCGTACA GCAACTCCAC GGCGACCGTC
GAGGTCAGCG TGGACGGCGG GACGACCTGG TCCTCGGTGT GGGCGCAGAG CACCAGCGCC
GTGACCGGCA GCAAGGTGCA GATCCCGCTG CCGCAGGCGG CCGGCAAGGC GCAGGTGCAG
GTGCGGTTCC ACTACACCGG TACCTGGGCC TACTACTGGG AGGTCGACAA CGTCCTGATC
GGGACGCCGA CCTGCGACCC GGTGCCCGGC GGTCTGGTCA TCGGCCAGGT CACCGACGCC
AACACCAAGG CGCCGCTGGC CGGCGTGCGC GTGTCGGAGA CCGCGGCGCC GACCGTCGGC
GGCACGTCGG CGGCCACCGC CGACCCGGCG ATGAAGGGCG CGTTCTACTG GTTCTTCTCG
CCGACCACCG GCTCGGTGCC GCTGACCGCG GCGAAGGGGC ACTACACCTC GGGCACCTCG
ACGGTCACCG TCGCGAAGTC CAAGGTCGTC GAGGCCGACT TCGCGCTGAA GGCGGGGCGG
CTCACCGTCA CCCCGGCGTC GGTCGCCAAG ACCGTCGCCT GGGGCGGGAA CGCCACGCAG
ACGGTCACGG TGAAGAACAC CGGCACCGCG CCGGCGACGC TGAACGTCAA CGAACAGCCC
GGCGGGTTCG TGATGCAGAA CGTCCCGGCG GCGCCCACGC AGATCGTGCC GGCGCACGTG
ACCACCGGCA GCGCGCTGCT GGCCTCGAAG AAGCCCGGCG CGGCAGCCGT GCACGCCACC
GCGCCGACGG CCGGTGACAG CTGGCAGCCG GTGGCGGACT TCCCGACGCT GATCCAGGAC
GACATCGCCG ACTTCTCCGG CGGCAAGCTC TACGCCGGGT TCGGCTTCGA CGGCACCAAC
GACTCCAACA AGCTCTACTC CTTCGACCCG GCGGCGGGCT CCTGGACGGC GCTGGCCTCG
GCGACCGACA CCCGCGAGTC CCCGGCGCAC GGGTTCATCA ACGGCAAGCT GTACGTCGTC
GGCGGGTGGG ACACCGCCGG CGACGCCGAC TCGAAGATGG AGGTCTACGA CCCGGCGGCG
AACCAGTGGA GCACGGGCCC GGCCTCGCCG ATGCCCTACG CCGGCGCCGG CAGCGCGGTG
CTCGGCTCGA CGCTGTACGT CGTCGGCGGC TGCACCAGCA CCTGCGGCAC CAACGACGTG
TACGCCTTCG ACGCCGGCGC CGGGACGTGG AGCAAGCTGG CCGCGTACCC GGAGTCCACA
GCGTGGCTGA ACTGCGCCGG CCTGCTGAAC AAGCTGGTCT GCGCCGGCGG CACCTCGGCG
ACCGCGGCGA GCCAGAGCAC GTACGTCTAC GACCCGGCGA CCGCGTCCTG GACCAAGGCG
GCCGACGCGC CGTCGGCGTT CTGGGCCGCG GCCGGAGCCG GCGCCAACGG CAAGCTGCTG
GTCACCGGCG GCGTGGTCGA CGGCGGCCTG ACCAACCAGG CCTGGGCCTA CGACCCGGCG
GCCGACGCCT GGTCCACCCT GCCGAACTCC AACGTCAGCG CCTACCGCTT CGCCGGCGCC
CTCGGGTTCT ACACTGTCGG CGGCGGCCAG GGCACCCTGA CCCCGCCGAT CGCGACCGCG
CAGGTCCTGC CCGGCTACAC CACCGGTCCG TCGGTGGACG TGCCGTGGCT CTCGGAGAGC
GCCACCACCG TGACGCTCGC CCCCGGCGCC TCGGGGACCT TCCAGGTCAC CGTGGACGCC
AGCGACGCGT CCATCACCCA ACCCGGCGGC TACACGGCCA GTCTGGGCCT GAGCTCCGAC
ACGCCGTACC CGCTGACCGC ACTCCCGGTG ACGATGACGG TGAAGCCGCC GGCGACCTGG
GGCAAGATCG CCGGCGCGGT GGAGTACACC AACGCCGGCG GAGCCCTGGT CCCGCTCGCC
GGCGCGACAG TCCAGATCGA CACATGGGCC GCGCACTACA CCCTGCACAC CGACATCAAC
GGCAACTACG CACTCTGGCT GGACTACCGC AACAACCCCC TGACGGTCAT CGCCGCCAAG
GACGGGTACC AGCCGGCCGT CAAGACGGTG ACGATCAAGA AGGGGGCGAC GAGCACGGCC
ACGTTCGTGC TGTTGAAGGA CTGA
|
|---|
| Protein sequence | MHIPFPPRLG KIVALAAALA LTTGVGSAAA AAGQASSVRT TGAVSATSTA GTARAEGAAS
AAAAKPGSLT SAKPNARSVC PPAAKGAFTC FALQRTDIVG ATGLAKADAT PSGFGPSDLL
SAYNLPADGG AGATVAIVDA YDDPNAEADL ALYRTQFGLP ACSTANGCFK KVDETGGTSY
PTPDSGWAGE ISLDLDMVSA IAPRAHIILV EATTPNFTDL GAGVDEAVAL GAGYVSNSYG
SNYTSTPGSG EDPSELTSMD PYYNHPGVAV LASTGDDSYG VAYPAASQYV TSVGGTSLVK
DTSTRGWSES VWSNSYGGPG SGCSLYEPKP SFQKDTGCAM RALADVSAVA DPATGVSVYD
TYQETGWQVY GGTSVSTPLL AGVYADAGAP AAGTYPNAYP YAKPSALNDV TQGSTSTCTP
SYLCTAGPGY DGPTGLGTPN GLTAFTSGPH GIVAGKVTDG TNPVAGAKVS AGTSSTTTAA
DGSYTLDVLP GTYTVGVSAF GYADQSVDGV VVADGATVAE NFTLAAVARV AVTGKVTDGS
GQGWPLYATI SVDGMPGGPV YTNPKTGAYT IQLPVNQTYQ LHTTAAYPGY QATDTPVTVG
VSAVTQPISV KVDPATCTAA GYRIGQDGLY QTFDGTTAPT GWTVTNNTAS GGWEFDDPGK
RGNVSTGTGG FAIVDSDFLG VSKSEDSYLT SPVTDMSAVA TPELDFATYY KPYSNSTATV
EVSVDGGTTW SSVWAQSTSA VTGSKVQIPL PQAAGKAQVQ VRFHYTGTWA YYWEVDNVLI
GTPTCDPVPG GLVIGQVTDA NTKAPLAGVR VSETAAPTVG GTSAATADPA MKGAFYWFFS
PTTGSVPLTA AKGHYTSGTS TVTVAKSKVV EADFALKAGR LTVTPASVAK TVAWGGNATQ
TVTVKNTGTA PATLNVNEQP GGFVMQNVPA APTQIVPAHV TTGSALLASK KPGAAAVHAT
APTAGDSWQP VADFPTLIQD DIADFSGGKL YAGFGFDGTN DSNKLYSFDP AAGSWTALAS
ATDTRESPAH GFINGKLYVV GGWDTAGDAD SKMEVYDPAA NQWSTGPASP MPYAGAGSAV
LGSTLYVVGG CTSTCGTNDV YAFDAGAGTW SKLAAYPEST AWLNCAGLLN KLVCAGGTSA
TAASQSTYVY DPATASWTKA ADAPSAFWAA AGAGANGKLL VTGGVVDGGL TNQAWAYDPA
ADAWSTLPNS NVSAYRFAGA LGFYTVGGGQ GTLTPPIATA QVLPGYTTGP SVDVPWLSES
ATTVTLAPGA SGTFQVTVDA SDASITQPGG YTASLGLSSD TPYPLTALPV TMTVKPPATW
GKIAGAVEYT NAGGALVPLA GATVQIDTWA AHYTLHTDIN GNYALWLDYR NNPLTVIAAK
DGYQPAVKTV TIKKGATSTA TFVLLKD
|
|---|
| |