Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3170 |
Symbol | |
ID | 8334523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 3500447 |
End bp | 3502852 |
Gene Length | 2406 bp |
Protein Length | 801 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644956316 |
Product | ABC transporter related |
Protein accession | YP_003113919 |
Protein GI | 256392355 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00102444 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGCCA AGACCAGCAC CGGCGAGCAG GCCGCTACCG CCGACGCCCC GCACGCCGCC GACAGCCACG ACCTGATCCG GGTCCACGGC GCCCGCGTGA ACAACCTCAA GGACGTCAGC ATCGAGCTGC CCAAGCGCCG CCTGACCGTC TTCACCGGCG TCTCCGGCTC GGGCAAGAGC TCGCTGGTCT TCGGCACGAT CGCGGCGGAG TCGCAGCGGC TGATCAACGA GACCTACAGC GCCTTCGTGC AGGGCTTCAT GCCCACGCAG TCGCGGCCCG ACGTGGACGT CCTGGACGGG CTGACCACCG CGATCATCGT GGACCAGCAG CGCATGGGCG GCGACCCGCG CTCCACGGTC GGCACGGCGA CCGACGCCAA CGCGATGCTG CGCATCCTGT TCAGCCGGCT CGGCACGCCG CACATCGGCT CGGCGAAGGC CTTCTCCTTC AACACTGCCT CGATCAGCGG CGCCGGCGCC GTCACGATGG AGAAGGGCGG CCAGACCGTC CGGGAGAAGC GCAGCTTCAG CGTCATCGGC GGCATGTGCC CGCGCTGCGA GGGCCGCGGC TCGGTCAGCG ACATCGACCT GGCCGAGCTG TACGACGAGT CCAAGTCGGT CAACGACGGC GCGATCACCG TGCCCGGCTA CTCCGGCGGC GGGTGGAACT CGCGGCTGTA CGCCGAATCG GGGTTCTTCG ACCCGGACAA GCCGGTGAAG AAGTTCACCA AGAAGGAGCT GCACGACTTC CTGCACCGGG AGCCGACGCG GATGAAGATC GCGGGCATCA ACATGACCTA CGAAGGTCTG ATCCCGCGCA TCCAGAAGTC GATGCTGTCC AAGGAGCGGG AGTCGCTGCA GCCGCACATC CGGGCGTTCG TGGACCGCGC GGTCACGTTC ACGACGTGCC CGGACTGCGA CGGCACGCGG CTGTCGGAGG GCGCGCGGTC CTCGAAGATC AAGGGGATCA GCATCGCCGA CGCCTGCGAG ATGCAGATCA GCGACCTGGC CGCGTGGGTG CGCGGGCTCT CCGAGCCGTC GGTGGCGCCG CTGCTGGCCG CACTGTCGCA GACCCTTGAC TCCTTCGTCG AGATCGGCCT GGGCTACCTG TCGCTGTCGC GCTCCTCCGG CACGCTGTCC GGCGGGGAGG CGCAGCGGGT GAAGATGATC CGGCATCTCG GCTCCTCGCT GACCGACGTC ACCTACGTCT TCGACGAGCC CACCGTCGGG CTGCACCCGC ACGACATCCA GCGGATGAAC GAGCTGCTGC TGCGGCTGCG CGACAAGGGC AACACGGTGC TGGTCGTGGA GCACAAGCCC GAGATGATCG CGATCGCCGA CCACGTCGTC GACCTCGGTC CCAGCGCGGG CTCCGGCGGC GGCGCGGCGT GCTTCGAGGG GACGATCGAC GGGCTGCGGG GCAGCAACAC CGTCACCGGA CGCCATCTGG ACGACCGTGC GGCGCTGAAG AAGCAGACGC GCGAGGCCAA GGGCGCGCTG GAGATCCGCG GCGCGTCGGC GAACAACCTG CGGGACGTGG ACGTCGACAT CCCGCTCGGG GTGCTGGTGG TCGTCACCGG CGTCGCCGGG TCGGGCAAGA GCTCGCTGAT CCACGGCTCG GTGACCAAGC ACCTGCACGA GGGCGTCGTC TCGATCGACC AGAGCCCGAT CCGCGGCTCG CGGCGCAGCA ACCCGGCCAC GTACACCGGG CTGCTGGAGC CGATCCGCAA GGCGTTCGCC AAGGCCAACG GCGTGAAGCC GGCACTATTC AGCGCGAACT CCGAGGGCGC CTGCCCGACC TGCAACGGCG CCGGGGTGGT GTACACCGAC CTGGCGATGA TGGCCGGGGT CGCGACGGTC TGCGAGGAGT GCGAGGGCAA GCGCTACCAG GCCGAGGTGC TGAAGTACGA GTTCGGCGGC CTGGACATCG CCTCGGTGCT GGCGCTGTCG GTGCAGGAGG CGGAGGCGTT CTTCGCCGAC GGCGAGGCGA AGCTGCCGGC CGCGCACAAG ATCCTGGCGC GGCTGTCCGA CGTGGGACTG GGTTATCTGA GCCTGGGGCA GCCGCTGACC ACGCTGTCCG GCGGCGAGCG CCAGCGGCTG AAGCTGGCCG TGGCGATGGC CGAGGACGGC GGGGTGTACG TGCTCGACGA GCCGACCTCC GGGCTGCACC TGGCCGACGT CGAGCAGCTG CTCGGGCTGC TGGACCGGCT GGTGGAGGCC GGCAAGTCGG TGGTGGTCAT CGAGCACCAC CAGGCGGTGA TGGCGCACGC GGACTGGATC GTGGACCTGG GACCGGGCGC CGGGCACGAC GGCGGGCGCG TGGTGTTCAC CGGGACGCCG GCGGATCTGG TCGCCAAGCG CTCCACGCTG ACCGGACAGC ATCTGGCGGA GTACGTCGGG GCGTGA
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Protein sequence | MAAKTSTGEQ AATADAPHAA DSHDLIRVHG ARVNNLKDVS IELPKRRLTV FTGVSGSGKS SLVFGTIAAE SQRLINETYS AFVQGFMPTQ SRPDVDVLDG LTTAIIVDQQ RMGGDPRSTV GTATDANAML RILFSRLGTP HIGSAKAFSF NTASISGAGA VTMEKGGQTV REKRSFSVIG GMCPRCEGRG SVSDIDLAEL YDESKSVNDG AITVPGYSGG GWNSRLYAES GFFDPDKPVK KFTKKELHDF LHREPTRMKI AGINMTYEGL IPRIQKSMLS KERESLQPHI RAFVDRAVTF TTCPDCDGTR LSEGARSSKI KGISIADACE MQISDLAAWV RGLSEPSVAP LLAALSQTLD SFVEIGLGYL SLSRSSGTLS GGEAQRVKMI RHLGSSLTDV TYVFDEPTVG LHPHDIQRMN ELLLRLRDKG NTVLVVEHKP EMIAIADHVV DLGPSAGSGG GAACFEGTID GLRGSNTVTG RHLDDRAALK KQTREAKGAL EIRGASANNL RDVDVDIPLG VLVVVTGVAG SGKSSLIHGS VTKHLHEGVV SIDQSPIRGS RRSNPATYTG LLEPIRKAFA KANGVKPALF SANSEGACPT CNGAGVVYTD LAMMAGVATV CEECEGKRYQ AEVLKYEFGG LDIASVLALS VQEAEAFFAD GEAKLPAAHK ILARLSDVGL GYLSLGQPLT TLSGGERQRL KLAVAMAEDG GVYVLDEPTS GLHLADVEQL LGLLDRLVEA GKSVVVIEHH QAVMAHADWI VDLGPGAGHD GGRVVFTGTP ADLVAKRSTL TGQHLAEYVG A
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