Gene Caci_3170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3170 
Symbol 
ID8334523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3500447 
End bp3502852 
Gene Length2406 bp 
Protein Length801 aa 
Translation table11 
GC content70% 
IMG OID644956316 
ProductABC transporter related 
Protein accessionYP_003113919 
Protein GI256392355 
COG category[L] Replication, recombination and repair 
COG ID[COG0178] Excinuclease ATPase subunit 
TIGRFAM ID[TIGR00630] excinuclease ABC, A subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00102444 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCGCCA AGACCAGCAC CGGCGAGCAG GCCGCTACCG CCGACGCCCC GCACGCCGCC 
GACAGCCACG ACCTGATCCG GGTCCACGGC GCCCGCGTGA ACAACCTCAA GGACGTCAGC
ATCGAGCTGC CCAAGCGCCG CCTGACCGTC TTCACCGGCG TCTCCGGCTC GGGCAAGAGC
TCGCTGGTCT TCGGCACGAT CGCGGCGGAG TCGCAGCGGC TGATCAACGA GACCTACAGC
GCCTTCGTGC AGGGCTTCAT GCCCACGCAG TCGCGGCCCG ACGTGGACGT CCTGGACGGG
CTGACCACCG CGATCATCGT GGACCAGCAG CGCATGGGCG GCGACCCGCG CTCCACGGTC
GGCACGGCGA CCGACGCCAA CGCGATGCTG CGCATCCTGT TCAGCCGGCT CGGCACGCCG
CACATCGGCT CGGCGAAGGC CTTCTCCTTC AACACTGCCT CGATCAGCGG CGCCGGCGCC
GTCACGATGG AGAAGGGCGG CCAGACCGTC CGGGAGAAGC GCAGCTTCAG CGTCATCGGC
GGCATGTGCC CGCGCTGCGA GGGCCGCGGC TCGGTCAGCG ACATCGACCT GGCCGAGCTG
TACGACGAGT CCAAGTCGGT CAACGACGGC GCGATCACCG TGCCCGGCTA CTCCGGCGGC
GGGTGGAACT CGCGGCTGTA CGCCGAATCG GGGTTCTTCG ACCCGGACAA GCCGGTGAAG
AAGTTCACCA AGAAGGAGCT GCACGACTTC CTGCACCGGG AGCCGACGCG GATGAAGATC
GCGGGCATCA ACATGACCTA CGAAGGTCTG ATCCCGCGCA TCCAGAAGTC GATGCTGTCC
AAGGAGCGGG AGTCGCTGCA GCCGCACATC CGGGCGTTCG TGGACCGCGC GGTCACGTTC
ACGACGTGCC CGGACTGCGA CGGCACGCGG CTGTCGGAGG GCGCGCGGTC CTCGAAGATC
AAGGGGATCA GCATCGCCGA CGCCTGCGAG ATGCAGATCA GCGACCTGGC CGCGTGGGTG
CGCGGGCTCT CCGAGCCGTC GGTGGCGCCG CTGCTGGCCG CACTGTCGCA GACCCTTGAC
TCCTTCGTCG AGATCGGCCT GGGCTACCTG TCGCTGTCGC GCTCCTCCGG CACGCTGTCC
GGCGGGGAGG CGCAGCGGGT GAAGATGATC CGGCATCTCG GCTCCTCGCT GACCGACGTC
ACCTACGTCT TCGACGAGCC CACCGTCGGG CTGCACCCGC ACGACATCCA GCGGATGAAC
GAGCTGCTGC TGCGGCTGCG CGACAAGGGC AACACGGTGC TGGTCGTGGA GCACAAGCCC
GAGATGATCG CGATCGCCGA CCACGTCGTC GACCTCGGTC CCAGCGCGGG CTCCGGCGGC
GGCGCGGCGT GCTTCGAGGG GACGATCGAC GGGCTGCGGG GCAGCAACAC CGTCACCGGA
CGCCATCTGG ACGACCGTGC GGCGCTGAAG AAGCAGACGC GCGAGGCCAA GGGCGCGCTG
GAGATCCGCG GCGCGTCGGC GAACAACCTG CGGGACGTGG ACGTCGACAT CCCGCTCGGG
GTGCTGGTGG TCGTCACCGG CGTCGCCGGG TCGGGCAAGA GCTCGCTGAT CCACGGCTCG
GTGACCAAGC ACCTGCACGA GGGCGTCGTC TCGATCGACC AGAGCCCGAT CCGCGGCTCG
CGGCGCAGCA ACCCGGCCAC GTACACCGGG CTGCTGGAGC CGATCCGCAA GGCGTTCGCC
AAGGCCAACG GCGTGAAGCC GGCACTATTC AGCGCGAACT CCGAGGGCGC CTGCCCGACC
TGCAACGGCG CCGGGGTGGT GTACACCGAC CTGGCGATGA TGGCCGGGGT CGCGACGGTC
TGCGAGGAGT GCGAGGGCAA GCGCTACCAG GCCGAGGTGC TGAAGTACGA GTTCGGCGGC
CTGGACATCG CCTCGGTGCT GGCGCTGTCG GTGCAGGAGG CGGAGGCGTT CTTCGCCGAC
GGCGAGGCGA AGCTGCCGGC CGCGCACAAG ATCCTGGCGC GGCTGTCCGA CGTGGGACTG
GGTTATCTGA GCCTGGGGCA GCCGCTGACC ACGCTGTCCG GCGGCGAGCG CCAGCGGCTG
AAGCTGGCCG TGGCGATGGC CGAGGACGGC GGGGTGTACG TGCTCGACGA GCCGACCTCC
GGGCTGCACC TGGCCGACGT CGAGCAGCTG CTCGGGCTGC TGGACCGGCT GGTGGAGGCC
GGCAAGTCGG TGGTGGTCAT CGAGCACCAC CAGGCGGTGA TGGCGCACGC GGACTGGATC
GTGGACCTGG GACCGGGCGC CGGGCACGAC GGCGGGCGCG TGGTGTTCAC CGGGACGCCG
GCGGATCTGG TCGCCAAGCG CTCCACGCTG ACCGGACAGC ATCTGGCGGA GTACGTCGGG
GCGTGA
 
Protein sequence
MAAKTSTGEQ AATADAPHAA DSHDLIRVHG ARVNNLKDVS IELPKRRLTV FTGVSGSGKS 
SLVFGTIAAE SQRLINETYS AFVQGFMPTQ SRPDVDVLDG LTTAIIVDQQ RMGGDPRSTV
GTATDANAML RILFSRLGTP HIGSAKAFSF NTASISGAGA VTMEKGGQTV REKRSFSVIG
GMCPRCEGRG SVSDIDLAEL YDESKSVNDG AITVPGYSGG GWNSRLYAES GFFDPDKPVK
KFTKKELHDF LHREPTRMKI AGINMTYEGL IPRIQKSMLS KERESLQPHI RAFVDRAVTF
TTCPDCDGTR LSEGARSSKI KGISIADACE MQISDLAAWV RGLSEPSVAP LLAALSQTLD
SFVEIGLGYL SLSRSSGTLS GGEAQRVKMI RHLGSSLTDV TYVFDEPTVG LHPHDIQRMN
ELLLRLRDKG NTVLVVEHKP EMIAIADHVV DLGPSAGSGG GAACFEGTID GLRGSNTVTG
RHLDDRAALK KQTREAKGAL EIRGASANNL RDVDVDIPLG VLVVVTGVAG SGKSSLIHGS
VTKHLHEGVV SIDQSPIRGS RRSNPATYTG LLEPIRKAFA KANGVKPALF SANSEGACPT
CNGAGVVYTD LAMMAGVATV CEECEGKRYQ AEVLKYEFGG LDIASVLALS VQEAEAFFAD
GEAKLPAAHK ILARLSDVGL GYLSLGQPLT TLSGGERQRL KLAVAMAEDG GVYVLDEPTS
GLHLADVEQL LGLLDRLVEA GKSVVVIEHH QAVMAHADWI VDLGPGAGHD GGRVVFTGTP
ADLVAKRSTL TGQHLAEYVG A