| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3159 |
|---|
| Symbol | |
|---|
| ID | 8334512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3473843 |
|---|
| End bp | 3474847 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956306 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_003113909 |
|---|
| Protein GI | 256392345 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0587569 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0845984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCA AAGCGATGAC CTTGACGCAA CGTGCCAGAT CCGGCGACGG CGCGGCGTTC
GACGAGCTCG TCGCCCCCTA CCGCCGTGAA CTCCAGGTGC ACTGCTACCG CATGCTGGGC
TCGTTCCAGG ACGCCGAGGA CGCGCTCCAG GACACGCTTC TCAGCGCCTG GCAAGGACTG
AGCGGCTTCG AGGAACGCTC CTCGGTCCGC ACCTGGCTCT ACCGCATCGC CACCAACCGC
TGCCTGAACG CCCGCCGCTC GGCGAGCCGC CGCAGCGCCA AGGAATGGAA CGTCCCGGGC
GTCGAGCCGC CGGCGCCGAC CAGGCTCGGC GAGGTGTTCT GGCTGGAGCC CTTCCCCGAC
GCCCTGCTCG AGGGCGTTCT CGACGCCTCA CCACCCGGTC CCGAGGCGCG CTACGAGCAG
AGCGAGGCGA TCTCGCTGGC CTTCGTGACC GCGCTACAGG TGCTGCCGCC GCGACAGGTG
GCGGTGCTGC TCCTACGCGA CGTTCTCGGA TACCACGGCG CCGAGGTCGC GGAGATGCTC
GACACGACAG CGGAATCGGT GAGCAGCGCC CTGAAGCGAG CCCGCGCCGG CCTCGAGCGC
CAGCGCTCTG CCAGCGCCCC AACCTCCGGC TCCTCCGAAG AAAGCGCACT CGCCGCCAAG
TTCGCCACCG CCTACGAAGC CGCCGACATC GAAACCCTGA TCGCCCTCCT GACCGACGAC
GTCTTCACCT CGATGCCCCC CATGCCCTTC GAGTACCAAG GCCGCGACGC CACCATCACC
TTCCTCACCA GCATCCTGGC CACCGGCCGC CGCCACCGCC TGATCCCCAC CCGAGCCAAC
AACCAACCCG CCTTCGGCGC CTACCTCCGC GGCACCGGCG CCACCAGCCA CGGCGTAGGC
CTCTTCGTCC TCGAAACCAC CACCACCGGC ATCAGCGCCA TGACCCGCTT CGAGAACGGC
GTCCTGCCCT GGTTCGGCCT GCCGCGCTCG ATCCCGGCGG CTTAG
|
|---|
| Protein sequence | MATKAMTLTQ RARSGDGAAF DELVAPYRRE LQVHCYRMLG SFQDAEDALQ DTLLSAWQGL
SGFEERSSVR TWLYRIATNR CLNARRSASR RSAKEWNVPG VEPPAPTRLG EVFWLEPFPD
ALLEGVLDAS PPGPEARYEQ SEAISLAFVT ALQVLPPRQV AVLLLRDVLG YHGAEVAEML
DTTAESVSSA LKRARAGLER QRSASAPTSG SSEESALAAK FATAYEAADI ETLIALLTDD
VFTSMPPMPF EYQGRDATIT FLTSILATGR RHRLIPTRAN NQPAFGAYLR GTGATSHGVG
LFVLETTTTG ISAMTRFENG VLPWFGLPRS IPAA
|
|---|
| |