| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2854 |
|---|
| Symbol | |
|---|
| ID | 8334203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3257843 |
|---|
| End bp | 3261151 |
|---|
| Gene Length | 3309 bp |
|---|
| Protein Length | 1102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644955998 |
|---|
| Product | portal protein |
|---|
| Protein accession | YP_003113604 |
|---|
| Protein GI | 256392040 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4695] Phage-related protein |
|---|
| TIGRFAM ID | [TIGR01537] phage portal protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0279665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00446406 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTCCGGT CGATGTTCAA CGTCGTCGGC AGCCTACTCA ACAAGAACGC CAACGCCTCA
CCGGTCCCCT ACGCCGCACC AGGCCGCTAC ATCATCCCCG CACTGTCCGG ACGCTCGGAC
AACGAGGTCT ACATGCGGGC GATGGGGACC GCGGGCACGA TCTTCCAAAT CGTGTCGCTG
CTGTCCTCCG CCAGCGCCAC CCCACAGTGG CGGCTGTACC GCAAGCCGAA AGCCGACGGC
AGACAGCGGT ACACCACCGG CGACCGCGGA TCCGACCAGC GCACCGAAGT GCTGCAGCAC
CAGGCGCTGA ACGTCTGGAA CAACCCGAAC CCGTTCACCA CCGGCGTCAA CTTCCGCGAA
GCCGGCTGGC AGCACATGGA GCTGACCGGC GAACAGTGGT GGGTTGTCGT CCGCGACTCC
CGAGCCACCT TCCCGACCGG GCTGTGGCTG GTCCGCCCGG ACCGCATGGA GCCGGTGCCG
TCGGCGGAGA AGTACATCGC CGGGTACGTC TACACCGGAC CGTCGGGCGA GCGGGTTCCG
CTGCAGCCCG AAGAGGTCAT CCTCACCAAA TACCCGAACC CCCTGGACCC ATACCGCGGG
CTCGGGCCGG TGCAGTCGGT GCTGGTCGAC ATCGACGCCA TGAAGTACGG CAGCGAGTGG
AACCGGAACT TCTTCATCAA CGGCGCTGTC CCCGGCGGCG TCGTCACTGT GCCGGGAAAC
ATGTCGGACG ACGAGTTCGA CCAGTTTTCG ACCCGGTGGC GCGAATCTCA CCAGGGCGTG
TCCCGGTCCC ACCGCGTTGC GATCCTCGAG GGTGGCGCGA CCTGGGTTCC GACCCAGATG
TCCATCAAGG ACATGGACTT CTCCAACCTG CGGAACGTCA GCAGGGATGT CCTGCGCGAG
GCCTGGGGCA TCCACAAGTC GATGCTCGGC AACGCTGACG ATGTCAACCG CTGCCACGAC
GACCAGACCG AGGTCCTCAC CAACGGCGGC TGGAAGCCGT TCGAGAAGGT CGAAGACGCC
GACCTCATCG CCACCGTTAA CCCCGCGACG CGCCGCATTG AATACCACGC GCCGATCCAC
CGCTTCGCCT ACGACTACCA CGGCGACATG GTTCGGATCG TCAACGACGT CATCGACGTG
AAGGTCACCC CCAACCACAC GATGCTGTAC GCGACACCGC GGTTGCCGGA CGTTTGGCGT
ACATGCCGCG CGGACCAACT CCCGTCCCGG TTCCTAGTTC AGACTGCCCC GGACGCCGAG
GACTGCGCGG ACCAGCAGTG GTTTGACCTG CCCGCCGTCG AATACGACAA CGGGCACTAC
GGTCGAGGCG GATCTGAACG CCTGCCGATG GATGCGTGGC TGGAGTTCCT GGGCTGGGTT
ATCTCCGAGG GCGGCATCCT GTCCGAGGAG CGTGCTGGCA ACCGCTACGT AATGACGCTG
GCGCAGAAGA AGTACCCGCA GCGGATCCGT GACTGTCTCG CGCAGCTTCC GTTCTCTGCC
TATGAGTACT TCGACGAGGG CGGTCAGATC GCCCGGTGGA ACATCACCGG CAAGGGTCTG
ATCACCTGGC TGCGGGAGCA CGTAGGCACC AACTGCCAGG ACAAGCGCAT CCCGCGGTGG
TGCTTCAACC TGTCGCTCCG GCAGCGGCGC ATCCTGTTCG ACGCGATGAT GGCTGGCGAC
GGCAGTCGCG ATCCACGGCC GGGCCGCTCG AACTGCTACT ACGCGACTAG CTCCCCGGGC
CTTGCCGATG ACGTGCTGGA GTTCGTCTTC CGTCTCGGCT GCCGCGCCAA CATGGCGTCA
CACCATGACG GACGCAGCGC TCGCGCGCCG ATGTACTACA TCCACATCAC CGACCGGCCG
GCGTCCTGGG TGACGGGATC CAACAACGTT TCGACCGAAC GTTACGACGG CAAGGTCTAC
AGCCTTGAGG TGCCGAACCA CATCTACGTG ACCCGGCGCA ACGGGCGCAT CGCGATACAC
GGCAACTCCA ACGCCCAAAC CGCCGAAGAA GTCTTCGGAC GCTGGAAGAT CATCCCCCGG
CTTGACCGGC TCCGCGACAC TCTCAACAAC CAGTTCCTGC CGATGTTCGG CAGCACCGGC
GAGAACGTCG AATGGGACTA CGTCAACCCG CTGCCGGACG ACCGCGAAGC CGACAACGCC
GAGCTCACCG CGAAGACCAC GGCCTACGCC GCGCTCATCA GCGCAAACGT CAACCCGGAC
GACGCTGCCG AAGTGGTCGG CCTGCCGCGG ATGCGCCACA TCATTCAGGT CCCGGCCGCA
ACCCCCACTA CCGGCGCCGG CGAACTTGAG CAGGCCGACG ACAGCAGCGG CGAGCCTACC
GAGGACGACA ATCCCGTCGA GAACCAGGTG CGCAGTTCCA TCCACGCCCG CACCCTCACC
GCGATTACCG CAGCCACAGG CGATTCGGGG CCGACGCCGC CAGCGCAGGG CCCGAACCAG
CCGGACCTGT CCCGCGTCGA TGCACAGTGG AAGTCGGCCA CCGACAATGT CGTCGCCGAC
TACCAGAGCC AGATCCTGCC CGCCCAGCAG CAGCAGTTGC AGCAGCAGAT CCGCGAACAC
GTGGACGCTG CCGAACTAGC CGCGCTCGGA ACGCTGGCCG TCGACACGGT CGCCGCGAAG
GCGTTGCTGC TTGCCGCGAT GGTCGCGTTC GCCGTGGTTG CCGCTCGGGA AGCCAGCCGC
GAAGCCGACG AGCAAGGCGC CAGCGTGCCG CCGAAGACGC CGGACTCCTC CGAGCTCGAA
ACGATCGCCG CAGTAGCTGT CGCCCTTATG GCTTCCGAGC TTGCGGTATC GGCCGGGCGA
GAAGCGATGC GGCTTGCCGT TCCCGGAGTT GGCGGGCAGC AGGTTGCGGA CCAGGTTGGG
CAGTTCCTGC AAGGCCTGTC CGAAGCCGGC CCCCGCGGGC ACCTGGCCGG AGCGATGTCG
GCGGCACAGA ACCGGGCCCG GCACGCCACA TTCACGCAGC ACGGCGCCCC GCGTGGGCAG
CTCCGGGCCG TAGAAGTCTT GGACTCGGCA ACCTGCGACA ACTGCGAAGA GATCGACGGG
ACCGTCTTCG GCGACACCGA TGACCCGGAC GCCGTGGCCG AGGCGTTCGC CGCGTACCCC
ATGGGTGGCT ACACGCTTTG CGAGGGGCGC GAACGTTGCC GCGGAACCCT TTTCGTCGAC
TACGACGTCG GGCCTGACTC CGATAACCCC GGTGACGACC TGACTGCAAT GTTGAAGAAG
CTCGTCAACC TTCTCGAGCC GGAACCGGCG CACATTAACG GACACCACCA CGAGAAGGCG
AGGACGTGA
|
|---|
| Protein sequence | MVRSMFNVVG SLLNKNANAS PVPYAAPGRY IIPALSGRSD NEVYMRAMGT AGTIFQIVSL
LSSASATPQW RLYRKPKADG RQRYTTGDRG SDQRTEVLQH QALNVWNNPN PFTTGVNFRE
AGWQHMELTG EQWWVVVRDS RATFPTGLWL VRPDRMEPVP SAEKYIAGYV YTGPSGERVP
LQPEEVILTK YPNPLDPYRG LGPVQSVLVD IDAMKYGSEW NRNFFINGAV PGGVVTVPGN
MSDDEFDQFS TRWRESHQGV SRSHRVAILE GGATWVPTQM SIKDMDFSNL RNVSRDVLRE
AWGIHKSMLG NADDVNRCHD DQTEVLTNGG WKPFEKVEDA DLIATVNPAT RRIEYHAPIH
RFAYDYHGDM VRIVNDVIDV KVTPNHTMLY ATPRLPDVWR TCRADQLPSR FLVQTAPDAE
DCADQQWFDL PAVEYDNGHY GRGGSERLPM DAWLEFLGWV ISEGGILSEE RAGNRYVMTL
AQKKYPQRIR DCLAQLPFSA YEYFDEGGQI ARWNITGKGL ITWLREHVGT NCQDKRIPRW
CFNLSLRQRR ILFDAMMAGD GSRDPRPGRS NCYYATSSPG LADDVLEFVF RLGCRANMAS
HHDGRSARAP MYYIHITDRP ASWVTGSNNV STERYDGKVY SLEVPNHIYV TRRNGRIAIH
GNSNAQTAEE VFGRWKIIPR LDRLRDTLNN QFLPMFGSTG ENVEWDYVNP LPDDREADNA
ELTAKTTAYA ALISANVNPD DAAEVVGLPR MRHIIQVPAA TPTTGAGELE QADDSSGEPT
EDDNPVENQV RSSIHARTLT AITAATGDSG PTPPAQGPNQ PDLSRVDAQW KSATDNVVAD
YQSQILPAQQ QQLQQQIREH VDAAELAALG TLAVDTVAAK ALLLAAMVAF AVVAAREASR
EADEQGASVP PKTPDSSELE TIAAVAVALM ASELAVSAGR EAMRLAVPGV GGQQVADQVG
QFLQGLSEAG PRGHLAGAMS AAQNRARHAT FTQHGAPRGQ LRAVEVLDSA TCDNCEEIDG
TVFGDTDDPD AVAEAFAAYP MGGYTLCEGR ERCRGTLFVD YDVGPDSDNP GDDLTAMLKK
LVNLLEPEPA HINGHHHEKA RT
|
|---|
| |