Gene Caci_2780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2780 
Symbol 
ID8334129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3189659 
End bp3192007 
Gene Length2349 bp 
Protein Length782 aa 
Translation table11 
GC content73% 
IMG OID644955928 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003113534 
Protein GI256391970 
COG category[R] General function prediction only 
COG ID[COG3903] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.223521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCACG ACGACCTGGC CGGGAGCCTG CGGAAGATCA AGGCGGAGTC GGGTCGCAGT 
CTGCGTGCGG TCGAGCAGGC CATCCACGTC AGCAACTCCT CGTTGTCGCG GTACCTGGCC
GGTCAGGCGA CGCCGTCGTG GAACGTCGTG GTGGCGTTCT GCCGGTTCAC CGGGCACGAC
CCCCGTCCGC TGCGGCCGCT GTGGGAGGCC GCCGAGCGGG AGCGGCGGGC ACCCGGCCGG
CCTTTCGCCG CCGACAGGCC GGCGGCGGCG AGCCGCGTGC CGCGCAACGA CCTGCCGCGG
GACGTCGCCG GGTTCACCGC CCGGCGGGCC GAGGTCGAGA CCGTGTCCCG GCTGGCGAGG
GCCGGACAGG CGGTGGCGAT CGACGGTATG GGCGGCGTCG GCAAGACCGC GCTGGCGGTC
AAGGTCGCGC ACCTGCTGAC GCCCGAATTC CCCGACTGCC AGTTGTATGT GGACCTGCAC
GGTTTCACGC CCGGCCGGGA CCCGGTCGAG CCGACGGAGG CACTGCTCGG ATTGTTGCGG
GCGCTCGGGG TTCCGGGCGG GCGCATCCCC GACGATCTGG CGGGCCGGTC CGCGCAGTGG
CGCTCCGAAC TGGCCCGGCA GCGCGCGATC GTCATCCTCG ACAACGCCGC GGACGCCGAC
CACGTCCGGG CCCTGTTGCC GGGTGCGGGC CGGAACACCG TGCTGATCAC CAGCCGGGTC
CGGATGGTCG GGTTGGACGG TGTCCAGCCG CTGTCCCTGG CCCCGCTGGG TCCGGCCGAC
GCGGCCGATC TGTTCACCGT CGCGCTGGGA CCCGGCACGG CTGCCGACCC GGAGACGGTG
GCCGAGCTGA TGCGGCGGTA CGGCGGTTTG CCGCTGTCCA TCCGGGTGGC CGCCGCGCGG
CTGCGCCACC GGCCGGCGTG GTCGGTCGCC GACCTGCTGG AGAGCCCGCC GCCGTCCGAC
GAGGCGGGGC TGGGGAAGGT CATCGACGCT TCCCTGGCCC GGCTGGGCGG CGACCAGCGC
CAGATGTTCC TGCTGCTCGG CCTGTACCCC GGAACGCTGA TCGGCCCGTT CGCCGCCGCG
GCGCTGGCCG GACGGCCGGT GACCGAGGCC CGGGCTTTGC TGGACGATCT GGTGGACGCG
AACCTGCTGG AAGAACCAGC CGCCCAGCGC TACCGCTTCC ACGACCTGAT CCGGCAGCGG
GCCGCCGAGG CCGCCCGGCG CGAGGAGTCG GCCGAGGGCC GGGACACCGC GCTGGACAGG
TTGACCGATT TCTACCTGCA CACGGTGACC TGCGGAGTGC GGGCCTTGGA CGTCGTCCCC
GAGCACGTCT TGCCGGTACG TCACGTTCCG GCCGAGGTCC CCGACATCAG CACCCCGGAA
CAGGCCATGT CCTGGTATCG CGACGAGGAA GCCACCCTCG TGCGGGTCGT CGAGCAGACC
GTGCGCCGAG GCCGCGACGA CCTCACCGCC CAGTTCGCGC TGCTGATCGG GGACCTGCTG
GGCCGCTATG GCCGATGGGA GCTGTGGCGC TGGATCGCCG ACATCGGGGT CCAGGCCGCC
GAGCGTCTGG GGAACCTCTC GATTCAGGCC GCGCTCGAAT ACAGCCGGGG GCTCGCCGCC
TACTTCACGG GTCGGCTGGA CTCTGCCGCG GCGGACTTCG CAGCCGCTGC CGACATCGCG
GCCCGGTCCG GCGCCGTCGG GATGCGGATC ATCGCGATCC GCGGAGTGGC CGCCGTCGCC
GAGGACCGCG GTGAGTTCAC GCGGGCCCTG GACTTGCTCG CGGAGGCTCG TCAGCTGCCG
CTGGCCGACC GGTATCCGAC CGAGGTCGCC ATCGCTGCTG TGCTCACAGC CCACCACTCC
CTTCTCGCGC TGGGGCGCGT CGCGGAGGCC GCTGATGTCG CCCGGGACGT GCTGGCCACG
GCCCAGGACC CGACGCCGCG CATCACGAGC CTGCGGGTAC TGGGCCGTGC CCGCCTGTCC
GATGGAGACC TACCGGGAGC GGTGACGTAC TTCCAGGAAG CCGAGGCGGC GTGCCGAGAC
AACCAAGACG CCTCATTCGC GGCCATCTGC CAAGGCGATG TCGCAGAAGC ACTGAGCCGG
CTCGGCCGCC ATGCCGAAGC TCTGGACCGG CATGAGGCGG CATTGGCCTG GGCCACCGAT
TTCGGCGACG TCTATCGGGA GATCTACCTG CGCGAAGCCT TCGCCCGCAG CTGTCTGGCG
GCCGGCGACC CGGACCGTGC CGTGGACCAG TTCCGGCAGG CGCTCGCACT GGCCGAACCG
CGCGGCTACC GGCACGTCGC GGGCTTGGCT CGGGACGGAC TCGCCCGGGC CCTGGCACCG
GTCGGATGA
 
Protein sequence
MSHDDLAGSL RKIKAESGRS LRAVEQAIHV SNSSLSRYLA GQATPSWNVV VAFCRFTGHD 
PRPLRPLWEA AERERRAPGR PFAADRPAAA SRVPRNDLPR DVAGFTARRA EVETVSRLAR
AGQAVAIDGM GGVGKTALAV KVAHLLTPEF PDCQLYVDLH GFTPGRDPVE PTEALLGLLR
ALGVPGGRIP DDLAGRSAQW RSELARQRAI VILDNAADAD HVRALLPGAG RNTVLITSRV
RMVGLDGVQP LSLAPLGPAD AADLFTVALG PGTAADPETV AELMRRYGGL PLSIRVAAAR
LRHRPAWSVA DLLESPPPSD EAGLGKVIDA SLARLGGDQR QMFLLLGLYP GTLIGPFAAA
ALAGRPVTEA RALLDDLVDA NLLEEPAAQR YRFHDLIRQR AAEAARREES AEGRDTALDR
LTDFYLHTVT CGVRALDVVP EHVLPVRHVP AEVPDISTPE QAMSWYRDEE ATLVRVVEQT
VRRGRDDLTA QFALLIGDLL GRYGRWELWR WIADIGVQAA ERLGNLSIQA ALEYSRGLAA
YFTGRLDSAA ADFAAAADIA ARSGAVGMRI IAIRGVAAVA EDRGEFTRAL DLLAEARQLP
LADRYPTEVA IAAVLTAHHS LLALGRVAEA ADVARDVLAT AQDPTPRITS LRVLGRARLS
DGDLPGAVTY FQEAEAACRD NQDASFAAIC QGDVAEALSR LGRHAEALDR HEAALAWATD
FGDVYREIYL REAFARSCLA AGDPDRAVDQ FRQALALAEP RGYRHVAGLA RDGLARALAP
VG