Gene Caci_2728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2728 
Symbol 
ID8334077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3125680 
End bp3127179 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content68% 
IMG OID644955878 
ProductAlpha-L-arabinofuranosidase B catalytic 
Protein accessionYP_003113484 
Protein GI256391920 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0684443 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.907122 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACTCA GCCACTATCG GTCCTGGCTG TCGGTCGGCG CCGCGGCCAC GATCGTGGCC 
GCGGCGGGAG CCGTCAGCAT GACGGCCGCG CCCACGGCTC AAGCCGCCGG CGGATGCCAG
GTGGACTACA GCGTGTCCAG CCAGTGGCAG GGCGGCTTCG GGGCGAACGT CAGCATCACC
AACCTCGGCG TCCCCACCAC GGGATGGACC CTGACTTGGA CATTCAGCGC CGGTCAGACC
ATCACGCAGC TGTGGAACGG CACTGACACC CAAACCGGCG GCGACGTCGC CGTGACGAAC
GCGCCCTACA ACGGCGCCAT CCCCACCGGC GGAAGCACCA GCTTCGGCTT CAACGGCTCG
TGGTCCACGA GCAATCCGGC GCCGGTCAGC TTCGCGCTCA ACGGGACCAC CTGTATCGGT
TCCGGTCCCT CGGGAACGCC GACCACCACG CCGTCGTCAC CGCCCACCAC CACGCCGTCG
TCACCGCCGA GTTCCACCCC CTCATCGACT TCATCGACAC CGTCCACGCC GCCGAGTTCC
TCCTCGACCA GGCTGCCCTG CGACATCTAC GCCGCCGGCG GCACCCCCTG CGTCGCGGCG
CACAGCACGG TTCGAGCTCT GTACTCCGCC TACGGGGGAG CCCTGTACCA GGTACGGCGC
TCCTCCGACA ACGCCACCAA GGACATCAGC GTCCTAACAC CCGGCGGATA CGCGAATGCC
GCGACTCAGG ACTCGTTCTG TGCCGGAACC TCGTGTGTGA TCACCGTCGT CTACGACCAG
TCCGGCCATG GAAACAGCGT GGCCTACCAA GGGCCGGGCG GTGCGGGAGG CAGCGACACC
CCGGCGAGCG CCACACGCGA ATCGCTGACG GCAGCCGGGC ACAAGGTGTA CGACCTCTAC
ATCAACCCGG GTAACAGCTA CTGGCACAAC GGGGCGTCCT CCGGCATGCC TGTCGGCAGC
CAGCCGCAGG GCGCGTACAT GGTGACCAGC GGCCTGCACG TCAACAGCGG CTGCTGTTTC
GACTACGGCA ACAGCGAGAC GGACCGCCGA GCCGACGGCG CGGGCGCGAT GGACGCCATC
AACTTCAGCA CGAGTTGCTG GTTCGGCGGA TGCACCGGCA GCGGCCCGTG GGTTCAAGCC
GACCTCGAAT ACGGCCTGTT CCCCGGTGGC AGCTCCTCCT GGAACCCGAA CCAGCGCGCG
TTCGCCGACA AGTACGTCAC CGCGATGTTG AAGAACAACG GCTCCACGCA AATGGCGCTC
AAGGGCGGTA GCGCACAGAC GGGCAGCTTG ACCACGCTCT GGAGCGGCGC CCTGCCGCGC
GGATACAACC CGATGAAGCA GCAGGGCGCG ATCATCCTCG GCAGCGGCGG TGACTGCTGT
GCGAGCAACA CCAACCTGAG TCTCGGCACC TTCTACGAGG GCGCGATCGT CGCGGGGTAC
CCGTCGGACG CCACCGACAG CGCGGTTCAG GCCAGCATCG TCGCGGCCGG ATACCAGTAG
 
Protein sequence
MKLSHYRSWL SVGAAATIVA AAGAVSMTAA PTAQAAGGCQ VDYSVSSQWQ GGFGANVSIT 
NLGVPTTGWT LTWTFSAGQT ITQLWNGTDT QTGGDVAVTN APYNGAIPTG GSTSFGFNGS
WSTSNPAPVS FALNGTTCIG SGPSGTPTTT PSSPPTTTPS SPPSSTPSST SSTPSTPPSS
SSTRLPCDIY AAGGTPCVAA HSTVRALYSA YGGALYQVRR SSDNATKDIS VLTPGGYANA
ATQDSFCAGT SCVITVVYDQ SGHGNSVAYQ GPGGAGGSDT PASATRESLT AAGHKVYDLY
INPGNSYWHN GASSGMPVGS QPQGAYMVTS GLHVNSGCCF DYGNSETDRR ADGAGAMDAI
NFSTSCWFGG CTGSGPWVQA DLEYGLFPGG SSSWNPNQRA FADKYVTAML KNNGSTQMAL
KGGSAQTGSL TTLWSGALPR GYNPMKQQGA IILGSGGDCC ASNTNLSLGT FYEGAIVAGY
PSDATDSAVQ ASIVAAGYQ