Gene Caci_2251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2251 
Symbol 
ID8333600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2554920 
End bp2555846 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content72% 
IMG OID644955404 
ProductABC transporter related 
Protein accessionYP_003113010 
Protein GI256391446 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000349445 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGACAAC CAGCCGTAGA AGTGACCGGC CTGGTCAAGA GGTACGGCGC CAAGACCGCG 
GTGGACGGCC TGGACCTGCG CGTGCAGACC GGGACCATCA CCGCCGTGCT CGGCCCGAAC
GGCGCCGGGA AGACCTCGAC CATAGAGTGC TGCGAGGGGT ACCGCCGTCC CGACGGCGGG
TCCGTCCGCG TGCTCGGGCT GGATCCGGTT ACCCAGGGTG AGCAGCTGCG GCCGCGGATC
GGCGTGATGC TGCAGTCCGG CGGCATCTAC CCCAGCGTGC GTGCGGCGGA GATGCTCAAG
CACACCGCCA AGCTCTACGC GAACCCCCTG GACACCGACG CGCTGATCGA GCGCCTGGGC
CTGGGCTCGG CCGGCCGGAC CACCTTCCGG CGGCTGTCCG GCGGGCAACA GCAGCGGCTC
TCGCTGGCGC TGGCCGTGGT CGGGCGGCCG GAGCTGGTGT TCCTGGACGA GCCCACCGCC
GGGCTGGACG TGCAGGCCCG GCACGCCACC TGGGAGCTGA TCGAGCAGCT GCGGCGGGAC
GGCGTCACCG TGGTGCTCAC CACCCACCTG CTGGACGAGG CCGAGCGGCT GGCCGACACG
GTGGCGATCG TCGACGCCGG CAAGGTGATC GCGCACGACA CCCCGGCGGC GCTGTCGGCC
GCGAACGGCA CCGCGGATAC CGCGATCCGC TTCACCGCGC CGCCCGGACT GGACCTGGCC
GGGCTCCTGG CGAAGCTGCC GGGCGGGCTG ACCGCCGTCG AGCAGCCGCC GGGCGGCTAC
ACCGTCGGCG GCGACATCAC CCCGAACGTG CTCGCCGCCG TGACCGCGTG GTGTGCCGCC
AAGGACGTGA TGCCGCAAGG GTTGAGCGTG GGACGCCGTA CGCTCGAAGA CGCCTTCCTC
GATCTGACCG GACGGGACCT CCGTTGA
 
Protein sequence
MGQPAVEVTG LVKRYGAKTA VDGLDLRVQT GTITAVLGPN GAGKTSTIEC CEGYRRPDGG 
SVRVLGLDPV TQGEQLRPRI GVMLQSGGIY PSVRAAEMLK HTAKLYANPL DTDALIERLG
LGSAGRTTFR RLSGGQQQRL SLALAVVGRP ELVFLDEPTA GLDVQARHAT WELIEQLRRD
GVTVVLTTHL LDEAERLADT VAIVDAGKVI AHDTPAALSA ANGTADTAIR FTAPPGLDLA
GLLAKLPGGL TAVEQPPGGY TVGGDITPNV LAAVTAWCAA KDVMPQGLSV GRRTLEDAFL
DLTGRDLR