Gene Caci_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1985 
Symbol 
ID8333328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2243030 
End bp2245423 
Gene Length2394 bp 
Protein Length797 aa 
Translation table11 
GC content66% 
IMG OID644955134 
ProductNB-ARC domain protein 
Protein accessionYP_003112746 
Protein GI256391182 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00414294 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.784778 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGACA GTCAACCGAT GAAGCCGGGG GCGAACACCG TGTCGTCCTG GCTGTCCGGG 
AATGCGCGGG AGGTGGTCCA GGCCCGCGAC ATCAGCGGCG GGATCCATAT TCATTCCGCG
GATCCGAGTC CGTTGCCGCG ACCGCGGCAG TTGCCTGCGG AGGTGTCGGC GTTCGTCGGG
CGAAGGCGGG AGTTCGAGCT TCTCCAGAGT TGGGTTCGAG GCGGCGGTGG TGCGGGCTCG
GCTGCCGGCG GGTCGGTGCT GATCGTCGGC ACTGCCGGTG TCGGGAAGAC GTCGCTGGCC
GTTGGCTTTG CGCATCGCAT ACGGAATGAC TTCCCCGACG GTCAGTTGTT CGTGAACCTG
CGCGGTTACG ACCCGGGACC GCCGCTGTCT TCCGCAGCGG CGTTGGAACG CTTCCTCCGT
GCGCTCGGGG TGCCGCCCGG CGCCATTCCG GTCGACCTTG AGGAACGCGC GGAGCTCTAC
CGAACGCTGC TGGCCGATCA TCGCATCCTG ATTGTCTTGG ACAACGCCGC GACCGTCGGT
CAGGTCCGTC CGCTGCTGCC CGGCGAGCCC GGATGTCTGG TGCTGGTCAC CACTCGCGGC
AGGTTGTCCG GGCTGTCCGC GCGCGAGGGG ACCCATCGGA TCTCGTTGGG GCTGCTGGAT
CAGGCTGAAG CTGTGGCGTT GGTGGAGGAA ACGACTGCGC CGTATCGTGA TCCCGATCCG
CCGGAGCAGG TCTCTGAGCT GGTCGCCTTA TGTGCCCGGC TGCCATTGGC GTTGCGGATC
GTCGCCGAGA GGGCGGCTGT CAGACCCCAT ATGCCTCTCC GAGAGCTGAT TTCGGATCTG
AGGCGAGAAT CGTCGTTGTG GGACGCGCTG TCCGCCGAGG ACTCAGCCGA TCCTGACGCC
GACGCGGTGC GCTCGGTGTT CGCCTGGTCT TACCGCGCGC TGCCGCCGGC GGCGGCCAAG
GCGTTCCGAC GCCTCGGGCT GCACCCCGGA CCCGAGTTCG GCTCGGGCGC GGCTGCCGCT
CTGGTCGGCG ACGATCTGAA GCGCACCCGG GGTCTGCTCG ACATCCTCGT CGGTGGTCAT
CTGCTGGAGC AGGTCGGTCC GGATCGCTAC CAGTTCCACG ACCTGCTCAG GGCATACGCA
CTCAGCCAAG TACATAGCGA TGAGAGCCCT GAAGAACGCG CCCTCGTCCT GAACCGCGTC
ATCAAGTGGT ACTTGTACGG AGCCAGTGCC GCAGTGGCCG CCACGCAGAC TCTCATCGAG
CCGGTAGCTG TCGAACCACC TGAGGCGACG CTGGAGCTTC CGGCCTTCGA CTCCACAACC
CAAGCCACGG ACTGGTACGC CGCCGAACGA GCCAACCTGA TTGCCGCGGT CCGCGTCGCC
GCCGAATCCG GCTTCCACAC ACTCGCATGG CAGATATCTG CGACGCTCTA TCCCATCCAG
GACGCCTACG GATCGCTCGA CGACTGGATC GACACCTCGA GCCAAGGACT GGAATCCGCA
CTGGCGGCAG GTGACCTCGC GGGACAGGCA TCGCTCCTCT ACAGCCTCGG CGCGGCTCTT
AGCGGCTCCC GCGAGTTGGA GCAAGCCGAA CCGCGCTTGG CGGAAGCAGT CCGGCTCTTC
ACTGAACTGA ACGATCGAAA CGGCCTTCTT CGCGCGACCA ACGCCCTAGG CCTGGTTAAC
CTCCGCCGCC GTCGATTCGA CGAGGCGGAA TCAATGTTTA TAACTTGCAT GTCTCTCGCC
GAGGAAGGCG AACAGCACGC GTGGCGTGCC ACGGCGTTGG ACAACCTCGG CTCCGCTTAC
GACGCGATGG GCGGTCGGCC ACAGGAGGCA GCCGAACTCT CCCTGGAGGC GCTGCAACAG
CTCCGCTCCA TCGATGCCGA CCCGCGTACC CTCGTCGACC CCCTCCTCAC GCTGGCACGC
ATAGCCCGCG ATGTAGGCGA CCTCGCGCAG GCGGAGGCGC ACGTGAACGA GGCGACGGAG
ATCATCGGCA GCGGCGTGGT CTTTCGCTCG CTCGCCTTTG CCGTTCTCCT CGAACAAGCC
GTTCAAGCCC TGCTTCACGG CCGCCACGAC CAAGCCATGG AGACGTACTT CCGCTGCTTG
GCGATGGCGC GGGAAATCGG CGATCGGACG CGCGAAGCGC TTGCGCAGGA CGGCATCGGC
AGGGTGTTGC AAGCGACCGA CCGCGTTGCC GAAGCTGTCG AGTTCTACAG GGTTGCCGCC
ACCTCCGGGC ACCCCAACGT GTTCGAGAAA GCATCGATTC TTCACCACCT CGCGGATGCC
CTGGAACAGA CGGCGCAGGC GGACGCGGCG AACAACGTGC GGCATCAGGC GCTCAAACTC
CTGGAGCCCT TCACTGACAA GCGCAGTGCG GATCTGCGCA ACAGACTGTC GTAG
 
Protein sequence
MADSQPMKPG ANTVSSWLSG NAREVVQARD ISGGIHIHSA DPSPLPRPRQ LPAEVSAFVG 
RRREFELLQS WVRGGGGAGS AAGGSVLIVG TAGVGKTSLA VGFAHRIRND FPDGQLFVNL
RGYDPGPPLS SAAALERFLR ALGVPPGAIP VDLEERAELY RTLLADHRIL IVLDNAATVG
QVRPLLPGEP GCLVLVTTRG RLSGLSAREG THRISLGLLD QAEAVALVEE TTAPYRDPDP
PEQVSELVAL CARLPLALRI VAERAAVRPH MPLRELISDL RRESSLWDAL SAEDSADPDA
DAVRSVFAWS YRALPPAAAK AFRRLGLHPG PEFGSGAAAA LVGDDLKRTR GLLDILVGGH
LLEQVGPDRY QFHDLLRAYA LSQVHSDESP EERALVLNRV IKWYLYGASA AVAATQTLIE
PVAVEPPEAT LELPAFDSTT QATDWYAAER ANLIAAVRVA AESGFHTLAW QISATLYPIQ
DAYGSLDDWI DTSSQGLESA LAAGDLAGQA SLLYSLGAAL SGSRELEQAE PRLAEAVRLF
TELNDRNGLL RATNALGLVN LRRRRFDEAE SMFITCMSLA EEGEQHAWRA TALDNLGSAY
DAMGGRPQEA AELSLEALQQ LRSIDADPRT LVDPLLTLAR IARDVGDLAQ AEAHVNEATE
IIGSGVVFRS LAFAVLLEQA VQALLHGRHD QAMETYFRCL AMAREIGDRT REALAQDGIG
RVLQATDRVA EAVEFYRVAA TSGHPNVFEK ASILHHLADA LEQTAQADAA NNVRHQALKL
LEPFTDKRSA DLRNRLS