| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1817 |
|---|
| Symbol | |
|---|
| ID | 8333160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2061097 |
|---|
| End bp | 2064081 |
|---|
| Gene Length | 2985 bp |
|---|
| Protein Length | 994 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644954967 |
|---|
| Product | vitamin B12-dependent ribonucleotide reductase |
|---|
| Protein accession | YP_003112579 |
|---|
| Protein GI | 256391015 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0780054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAGA CGGCTAGCGG ACCGCGCGGC GCGGCGTCGG CCCGCGGCAA CGGGAAGGCT
CCCATGAAGC CCGGGCAGGT CGTGCCCGCC CCGGGTGTTT CCCATGAGGC GAAGGCTCCC
GCCAAGGGCG GCAAGGGCAT GACGATCCAG CGGATCCACA CTAAGCCCGG CGTGCACCCC
TACGACGAGG TCGTCTGGGA GCGCCGCGAC GTCGTGATGA CCAACTGGCG CGACGGCTCG
GTCAACTTCG AGCAGAAGGG CGTGGAGTTC CCCGGCTTCT GGTCGGTCAA CGCCGCGAAC
ATCGTCACCA CCAAGTACTT CCGCGGCGCC GTGGGCACCC CGGTCCGCGA GTGGTCGCTC
AAGCAGCTGA TCGACCGGAT CGTGAAGACC TACCGCAAGG GCGGCGAGGA CCACGGGTAC
TTCGCGACGC CGCAGGACGC GGAGATCTTC GAGCACGAGC TCGCCCACGC GCTCCTGCAC
CAGATGTTCG CCTTCAACTC CCCGGTCTGG TTCAACGTCG GCACCAAGTC CCCGCAGCAG
GTCTCGGCGT GCTTCATCCT GTCGGTCGAC GACTCGATGG ACTCGATCCT GAACTGGTAC
CGCGAGGAGG GGCTGATCTT CAAGGGCGGC TCCGGCGCCG GCCTGAACCT GTCCCGCATC
CGCTCCTCCA AGGAGCTGCT GTCCTCCGGC GGCAACGCCA GCGGCCCGGT CTCCTTCATG
CGCGGCGCCG ACGCCTCGGC CGGCACCATC AAGTCCGGCG GCGCGACCCG CCGCGCGGCC
AAGATGGTCG TGCTGGACGT GGACCACCCG GACATCGAGG AGTTCGTCCA GACCAAGGCG
CGCGAGGAGG ACAAGATCCG CGCGCTGCGC GACGCCGGGT TCGACATGGA CCTCGGCGGC
AAGGACATCA CCAGCGTCCA GTACCAGAAC GCGAACAACT CGGTCCGCGT CACCGACGAG
TTCATGCACG CGGTGCAGAA CACCGAGCGC TTCGGGCTGC GCGCCCGGCA GACCGGCGAG
GTCATCGAGA CCCTCGACGC CAAGCAGCTG TTCCGCGACA TCGCGAAGGC CGCGTGGGAG
TGCGCGGACC CCGGGCTGCA GTACGACGAC ACCATCAACG CCTGGCACAC CAACCCCGAG
ACCGGCCGCA TCACCGCGTC CAACCCGTGC TCGGAGTACC TGTCGCTGGA CAACTCCTCG
TGCAACCTGG CCTCGCTGAA CCTGATGAAG TTCCTGCGCG AGGACGACAC CTTCGACACC
GAGACCTTCG TGAAGATGGT CGAGCTGGTC ATCACCGCGA TGGACATCTC CATCAGCTTC
GCGGACTTCC CGACCCCGGA GATCGGCCAG ACCACCCGCG ACTTCCGCCA GCTGGGCATC
GGCTACGCCA ACCTCGGCGC GCTGCTGATG GCCACCGGCC ACGCCTACGA CTCCGAGGGC
GGCCGGGCCA TCGCCGCGGC GATCACCTCG CTGATGACCG GCGTGGCCTA CCGCCGCTCG
GCCGAGCTGG CCGGCGTGGT CGGCCCGTAC AACGGCTTCG CCCGCAACGC CAAGCCGCAC
GCGGCCGTGA TGCGCAAGCA CGCCGACGCC GCGGACGCCT ACGTGCCCTT CGAGGACTTC
GACAAGCAGA TCCTCGAGCT CTCGCGCACC GAGTGGCAGC GCGGCAACGA GATCGGCGCG
GCCAACGGCT GGCGCAACGC CCAGGCCTCG CTCCTGGCGC CGACCGGCAC CATCGGCTTC
ATGATGGACG TCGACACCAC CGGCGTGGAG CCCGACCTGG CGCTGGTGAA GTTCAAGAAG
CTCGTCGGCG GCGGCTCGAT GCAGATCGTG AACAACACCG TCCCGCGCGC CCTGAAGCGC
CTGGGCTACC AGCAGGAGCA GATCGAGGCC ATCGTCGAGT ACATCGGCGA GCAGGGCCAC
GTCGTCGACG CACCGGGTCT GAAGCCCGAG CACTACTCGG TCTTCGACTG CGCGATGGGC
GAGCGCTCGA TCGCCCCGAT GGGCCACGTC CGCATGATGG CGGCGATCCA GCCCTTCCTG
TCCGGCGCCA TCTCCAAGAC GGTGAACATG CCGGAGGAGG CCTCGATCGA GGACGTCGAG
GAGATCTACT TCGAGGGCTG GAAGCTCGGC CTGAAGGCCC TGGCGATCTA CCGCAACAAC
TGCAAGGTCG GCCAGCCGCT GCAGGACGCC AAGGGCCAAA AGGCCGCCGC GGCCGCCGCC
GCATCGGTCG CCGCCGCCAC CGCGCCGGCC GCCGCAACCG CCACCGGCAC CTCGCCCGCA
GCCGCCACCC TGTACGCCCA GCCGGTCCGC AAGCGCCTGG GCAAGAACCG CCGCGGCATC
ACCAGCTCCT TCTCCGTGGG CGGCGCCGAA GGCTACATGA CGGCGAACTC CTACACCGAC
GGCGACCTCG GCGAAGTCTT CCTGAAGATG TCGAAGCAGG GCTCAACCCT CGCCGGCATG
ATGGACGCCT TCTCCATCGC CATCTCAGTG GGCCTGCAAT ACGGAGTCCC CCTCGAGACC
TACGTCGCCA AGTTCACCAA CATGCGCTTC GAACCCGCCG GCATGACCGA CGACCCCGAC
GTCCGCATGG CCCAGTCGAT CATCGACTAC ATCTTCCGCC GCCTAGCCCT GGACCACCTG
GACTTCGACA CCCGAGCCGC CTACGGCATC TACACCAACG AAGAACGCCA GCGCCAGCTC
GAAACCGGCA GCTACCTCCC CGACGAGGAC CAGCAACTAG ACCACGAAAC CCTCGCCCAA
TCCGCCCCCA TAGAGCACCG GACCGAACCG GCCGCCCCGG CAAAAAAGAC CGACCCCACC
ACCCTCCCCG CCCCCAAGAG CATCGGCTCC TCCACAGAAC TCCTGGAGGC CAAGCTCGGC
TACGCCGCCG ACGCCCCGCT CTGCCTGACC TGCGGGACGA AGATGCGCCC TTCGGGCAGC
TGCTACGTGT GCGAGGGGTG TGGGTCTACG AGCGGGTGCA GCTGA
|
|---|
| Protein sequence | MTETASGPRG AASARGNGKA PMKPGQVVPA PGVSHEAKAP AKGGKGMTIQ RIHTKPGVHP
YDEVVWERRD VVMTNWRDGS VNFEQKGVEF PGFWSVNAAN IVTTKYFRGA VGTPVREWSL
KQLIDRIVKT YRKGGEDHGY FATPQDAEIF EHELAHALLH QMFAFNSPVW FNVGTKSPQQ
VSACFILSVD DSMDSILNWY REEGLIFKGG SGAGLNLSRI RSSKELLSSG GNASGPVSFM
RGADASAGTI KSGGATRRAA KMVVLDVDHP DIEEFVQTKA REEDKIRALR DAGFDMDLGG
KDITSVQYQN ANNSVRVTDE FMHAVQNTER FGLRARQTGE VIETLDAKQL FRDIAKAAWE
CADPGLQYDD TINAWHTNPE TGRITASNPC SEYLSLDNSS CNLASLNLMK FLREDDTFDT
ETFVKMVELV ITAMDISISF ADFPTPEIGQ TTRDFRQLGI GYANLGALLM ATGHAYDSEG
GRAIAAAITS LMTGVAYRRS AELAGVVGPY NGFARNAKPH AAVMRKHADA ADAYVPFEDF
DKQILELSRT EWQRGNEIGA ANGWRNAQAS LLAPTGTIGF MMDVDTTGVE PDLALVKFKK
LVGGGSMQIV NNTVPRALKR LGYQQEQIEA IVEYIGEQGH VVDAPGLKPE HYSVFDCAMG
ERSIAPMGHV RMMAAIQPFL SGAISKTVNM PEEASIEDVE EIYFEGWKLG LKALAIYRNN
CKVGQPLQDA KGQKAAAAAA ASVAAATAPA AATATGTSPA AATLYAQPVR KRLGKNRRGI
TSSFSVGGAE GYMTANSYTD GDLGEVFLKM SKQGSTLAGM MDAFSIAISV GLQYGVPLET
YVAKFTNMRF EPAGMTDDPD VRMAQSIIDY IFRRLALDHL DFDTRAAYGI YTNEERQRQL
ETGSYLPDED QQLDHETLAQ SAPIEHRTEP AAPAKKTDPT TLPAPKSIGS STELLEAKLG
YAADAPLCLT CGTKMRPSGS CYVCEGCGST SGCS
|
|---|
| |