| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1805 |
|---|
| Symbol | |
|---|
| ID | 8333148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2044438 |
|---|
| End bp | 2046504 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644954955 |
|---|
| Product | Putative cell wall-binding domain-like protein |
|---|
| Protein accession | YP_003112567 |
|---|
| Protein GI | 256391003 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2247] Putative cell wall-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.203584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.132766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTCGCG ATTCGAGGGT CGCCCGCGCC CTCACCGTGG CCGCCGCGTT CGGCGCCGCC
ACTGCGACCG GCGCCCTGGG CCTCGCAGCT CCGGCTGCGA ACGCCGCCTC CGGCGCCCCG
CACAACGGGC AGATCAGCTA CAGCCAGGGC CAGGCCTGGT ACGCCGTCAA TCCGGACGGT
TCGGGGAAGC ACATCGTCAC CCCGTCCGGC GGCGGCTTCG ACCCGAGCGA CGCGACGCCC
TCGCCGGTGT TCTCGCCGGA CGGTACCCGG GCCGTGTTCA TGGACGAGAC CACCGGCAGC
CTGTGGACGT CGAACGCCGA CGGTACCGGT GCCCGGCTGC TCGACAAGGC GACCGGCCCG
ATCGTCGACG GCGTCGATCC GGCGGACCTC GCCCCGCAGT GGCTGGACGA CTCGACGATC
GTGTTCGAGC GGAACAACGG CGGCGGGTAC TTCCAGATCA AGGCCGACGG CAGCGGGCTC
ACCGCCTACA AGGCGCCCGG CGGACTGCAG GGCCAGCTGG TCTTCGGGCC CGGCGGCCTG
GTGGCCGGCA TCCAGAACAA CGGCTACACC TTTACCATCT CGATCTTCGA CCCGGCCACG
TCCACTGTCG CCACGGTGCC GAACGCGGAC TCGATCAGCT TCTCGCCGGA CGGCAAGAAG
ATCGCCCACA CCGTGTACGG GGGCGGACAC GGCACGGCCC AGATCGTCGT GGCGAACATC
GACGGCACCT CGCCGACGAC GCTCACGCAC GTCGCGGGCT CGGCGTTCGG GCCGGTCTGG
TCGCCGGACG GCACCGAGAT CGCGTTCCAG GAGCAGACCT GGACGGCCGC CTCCGGCTGG
GGCACCAACA ACCTGGACGT GGTTCCGGCC GCCGGCGGGG ACCCGAAGGC GATCATCACC
GACGCCACGA TCGCCGGAGG CTACCTGGCC TGGGACAACG GACCGCTCTA CACCGGCCCG
ACGAACGCGC CCAGCCCGTT CCTGCCGCCG GTCACGCGCC CCGCCATCGA CCGCCTCGGC
GGCGCCGACC GGGTCGACAC CGCGGTGAAG GTGTCGGGGT ACAACACCGC CGACCGGGGC
ACCACCGTCT CCTCGCACGG TGCGAACGTC GTCGCGAAGA CCGCGGTGCT CTCCCGCGAC
GACCAGTTCG CCGACGCGCT GTCCGGCAAC GCGCTGGCGA TCGCGAAGGG CGGGCCGCTG
CTGCTGACCG ATCGGCACAA GCTCTCCCCG GAGGTCGCCA AGGAGCTGAC CCGGATCCTG
CCGCCGGGCG CGACCATCTA CCTGCTCGGC GGTGAGCAGG CGCTGTCGCC GCAGGTCGCG
GCCGACGTCA CCGCTCTGGG CTTCAAGGTG GACCGGATCG GCGGCACCGA CCGGTTCGCG
ACCTCGGTGC ACATCGCCCA GACGATCGGC GGGACGCCGG GCAGCGTCGC CGTCGCGACC
GGCAAGGACT ACCCCGACGC CCTGACGGCC GGCGCCGGCG TCAGCGGCAG CAGCACCTCG
CCGAAGGTGA CCACCGGCGT GGTCCTGCTC ACCGACGGCG GTGCGCTGCC GAAGGAGACG
AAGGACTACC TCGCGGGCAT CGACCCGACC GTCAGCAAGG TCTACGCCGT CGGCGGCCCG
GGCGTCACCG CGGTGGCCAC CGGGGAGCCG AGCTGGCACG GCAAGGTCAC GAACCTGTCC
GGCAGCGACC GGTACGCCAC GGCCGCGGCG GTGGCCAACA GCGCGATGTT CCAGACGCAG
AACGGCGGTC CGGTGGTTCC GGGCATCGCC ACCGGCCGGA ACTGGCCGGA CGCGCTGTCC
GGCGGGGCGC TGACCGGCCG CTGGGGCTCG CCGCTGCTGC TGGCCGACGG CGGGACGCTG
CCGGCGTCCG AGCTGGGCTG GCTCAAGCAG CACGCGCCGC TGACCAAGAC CGGACTCAGC
GGGCTGGTGG GCGCGCTGCC GGTGTTCGGC GGCCCGGTCG CCGTGCCGGA CAGCGTGGTC
AAGCAGGTCG GCGTCGCGCT GTACGGGGCG GGCAAGTACG ACGTTTTCGA CAACCGGCAC
CTGGCGACGA TCCTCGGACC GTTTTAA
|
|---|
| Protein sequence | MTRDSRVARA LTVAAAFGAA TATGALGLAA PAANAASGAP HNGQISYSQG QAWYAVNPDG
SGKHIVTPSG GGFDPSDATP SPVFSPDGTR AVFMDETTGS LWTSNADGTG ARLLDKATGP
IVDGVDPADL APQWLDDSTI VFERNNGGGY FQIKADGSGL TAYKAPGGLQ GQLVFGPGGL
VAGIQNNGYT FTISIFDPAT STVATVPNAD SISFSPDGKK IAHTVYGGGH GTAQIVVANI
DGTSPTTLTH VAGSAFGPVW SPDGTEIAFQ EQTWTAASGW GTNNLDVVPA AGGDPKAIIT
DATIAGGYLA WDNGPLYTGP TNAPSPFLPP VTRPAIDRLG GADRVDTAVK VSGYNTADRG
TTVSSHGANV VAKTAVLSRD DQFADALSGN ALAIAKGGPL LLTDRHKLSP EVAKELTRIL
PPGATIYLLG GEQALSPQVA ADVTALGFKV DRIGGTDRFA TSVHIAQTIG GTPGSVAVAT
GKDYPDALTA GAGVSGSSTS PKVTTGVVLL TDGGALPKET KDYLAGIDPT VSKVYAVGGP
GVTAVATGEP SWHGKVTNLS GSDRYATAAA VANSAMFQTQ NGGPVVPGIA TGRNWPDALS
GGALTGRWGS PLLLADGGTL PASELGWLKQ HAPLTKTGLS GLVGALPVFG GPVAVPDSVV
KQVGVALYGA GKYDVFDNRH LATILGPF
|
|---|
| |