| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1752 |
|---|
| Symbol | |
|---|
| ID | 8333095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1982598 |
|---|
| End bp | 1984250 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644954902 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003112514 |
|---|
| Protein GI | 256390950 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.907741 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAG GCACCCTTGT CGGCCCCGCC GACGAGCCTT TGAACCAGGT TCCGCCGTTG
GCCGGGTACA ACGCCTATAC CGCCGACCCC TCCCTGGTGG CGGCCGTCCA CCGGCTGTTC
GGGTCCGGTT CGGCGACGGA CACCGAGCTG ACCGGGCTTG GCGCGCTCGC CGGGTCTTTC
GAGGCCCGGG AGTGGGGACG ACTCGCCGAG GCGAATCACC CGATCCTTCG AACCCACGAT
CGCTACGGCC GCCGTATCGA CGAAGTCGAG TTCCACCCGG CGTGGCACGA GCTGATGACC
GTCGCCGTCA GCCACGGCAT CGCCGCCGCC CCCTGGCTGG AGGACGCCGG CACGCTGCGG
CACACCGCCC GCGCCGCCAA GATGCTGGTC TGGGGACAGA CCGAGGGCGG CCACCTGTGC
CCGGTCTCGA TGACCTACGC GGCCGTCCCG GCGCTCGCCG CCGACCCGAT GCTGGCCGCG
GAGTGGACGC CGCGCCTGGC GTCCACGAGC TATGACTTCG GCCTGCGCGA CCCCGCCACC
AAGGCGGGCT GCCTGGCCGG CATGGGCATG ACCGAGAAGC AGGGCGGCTC CGACGTCCGC
GCCAACACCA CCAAGGCGAC GCCGGCTGCC GGCTCGGACC GCGAGTACAC GCTGATCGGC
CACAAGTGGT TCACCTCCGC GCCGATGTGC GACGTGTTCC TGGTGCTGGC CCAGGCGCCC
GGCGGCTTGA CCTGCTTCGT GATCCCGCGC GTGCTGCCCG ACGGGAGCCG TAACTCCTTC
CGCCTTCAGC GGCTGAAGGA CAAGCTGGGC AACCGGGCCA ACGCCTCCTC GGAGGTCGAG
TTCCACAACA CCCGCGCCTG GCGGCTCGGC GACGAGGGCC GCGGCGTGGC CACCATCATC
GAGATGGTCG CCATGACCCG TCTGGACTGC GTCACCGGCT CCGCCTCGCT GATGCGCGCG
GCGCTCGCCG AGGCGGTGCA CCACACGCGG CACCGCATGG CGTTCGGCAA GCTGCTCGCC
GACCAGCCCT TGATGCGCAA CGTGCTCGCC GACCTCGCGC TGGAGTCCGA GGCGGCGACG
CTCACCTCAC TGCACCTCGC CGCGGCCACG GACGCCGGCT CGGACCCGGC CGCGCGCAAG
TTCCGCCGCA TCGGTCTGGC GGTGGCGAAG TACTGGGTCA CCAAGCGCTG CGCGCCGTTC
GCGGCCGAGG CGCTGGAATG CCTGGGCGGG AACGGCTACG TCGAGGAATC CGGGATGCCG
CGCCTGTACC GGGAAGCGCC GCTGAACTCC ATCTGGGAGG GCTCGGGGAA CGTCAACGCG
CTGGACGTGC TGCGTGCCCT CGGCCGGGAA GACGGTGTGT GGGACGCGTT CTGCGCGGAG
GTCGGCACGG CGTGCGGCGC CGACGCGCGG TTCGACGCCG CGTTCAAGGA GCTGAAGGAC
GAGGTGGCCT CGGTGGACGA AGCGGGCGCG CGTCGGTTCG TGGAGCGGAT GGCGTTGCTG
ATGCAGGGTT CGCTGATGCT GCGTTACGCG CCGACCGAGA GCGGGGACGC CTTCGTCGCC
TCGCGGCTCG CCGGCGACTG GGGTCGGACC TTCGGGACGC TGCCGCGCGG GCTGGCGATC
GAGGCGATCG CCGGGCGCGC GCTGGCGGTG TGA
|
|---|
| Protein sequence | MPEGTLVGPA DEPLNQVPPL AGYNAYTADP SLVAAVHRLF GSGSATDTEL TGLGALAGSF
EAREWGRLAE ANHPILRTHD RYGRRIDEVE FHPAWHELMT VAVSHGIAAA PWLEDAGTLR
HTARAAKMLV WGQTEGGHLC PVSMTYAAVP ALAADPMLAA EWTPRLASTS YDFGLRDPAT
KAGCLAGMGM TEKQGGSDVR ANTTKATPAA GSDREYTLIG HKWFTSAPMC DVFLVLAQAP
GGLTCFVIPR VLPDGSRNSF RLQRLKDKLG NRANASSEVE FHNTRAWRLG DEGRGVATII
EMVAMTRLDC VTGSASLMRA ALAEAVHHTR HRMAFGKLLA DQPLMRNVLA DLALESEAAT
LTSLHLAAAT DAGSDPAARK FRRIGLAVAK YWVTKRCAPF AAEALECLGG NGYVEESGMP
RLYREAPLNS IWEGSGNVNA LDVLRALGRE DGVWDAFCAE VGTACGADAR FDAAFKELKD
EVASVDEAGA RRFVERMALL MQGSLMLRYA PTESGDAFVA SRLAGDWGRT FGTLPRGLAI
EAIAGRALAV
|
|---|
| |