| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1230 |
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| Symbol | |
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| ID | 8332565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 1387528 |
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| End bp | 1394103 |
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| Gene Length | 6576 bp |
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| Protein Length | 2191 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644954377 |
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| Product | YD repeat protein |
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| Protein accession | YP_003111996 |
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| Protein GI | 256390432 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.249326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGGA TGTCCCCTCC GTCGTCCGGC AGACGCCGGC ACGCACGATG GCGACACCGC
CTCACCACCG TCGCGGCCGC GGGCGCCATG CTCGCCGGCA GCGGCCTGAA CCCGGCCCAG
GCGGCACCGG CGGGTGCCGG CAAGCACTGG CAGCCGGTCG CCACGCAGAA GACGCCGTCG
GTGCCCGGCC ACGCCGGGGT GCCCGCCGGG CAGCCGGCTC CGGCGACGTC CGCGAACCAC
GGTGTGCCGC CGGTCGCCTA CCAGGCGACG GCACCGGTCT GGCCTGCGGG TCAGGCTTCT
GCGACGCTCG CCGCCCCCGT CCCGCCCGCG ACGCCCGCCG CCGCCGAACC CAAGCCCGCG
ACCGGATCCG GCGGACACCC CACGAGCCCG CCTGCCGATT CCTCGCCGAC CGCGGCGAAC
TCCTCGGACA CCGCCGGTCC GGCGGCCAAA CTCGCCGGCC TGCCGGTGAC CCTCGCCTCC
GCCGACGGCA CAACCGCCGC CACGGTCGCG TTCGCACCCC GCGCCGCCGT CGCGGCGGCG
GGCGTGGACG GCGTCATCCT CACCCTGTCC CGCACCGACG GCGGACGGAC CGCCTCCCCT
GTCGATCTGT CGCTGGACTA TAAGGGCTTT GCGACAGCGA GCGGCGGCGG CTACGCCGAC
CGCTTGACCT TGGTGGAGAT GCCGGCGTGC GCCCTGACGA CGCCGACGGT GCCGTCATGC
CGCGCGCAGA CGCCGATCGC GGCGAAGAAC GACACCGCGT CCGGCACGCT GTCCGCGCAG
GTGGCGCTCT CCGCGACGCC GATGGTCCTG GCCGCCTCGC CGCAGGCGTC CGGCGGTGTC
GGCGACTACT CGGCGACTTC GCTCTCCCCT GAGGGCTCGT GGTCCAGCGG CGGCAACACT
GGTTCGTTCG CCTACAGCTA TCCGATCGCC GTACCCCCGG CCTCCGGCGG CACGGCGCCC
AGTGTCGCGC TGTCCTACGA TTCGGGCAGC GTGGACGGCC GCACCTCGGT CACCAACGCC
CAGGCGTCCT GGATCGGCGA CGGCTGGGAC TACTCGCCGG GCTTCATCGA GCGTTCCTAC
CAGCCGTGCT CCCAGGACGG CATCAAGAAC TCCGGTGACA CCTGCTGGGG CGGCAACCAG
GTCACCCTGA GCATGAGCGG ACTGAGCGGG ACCCTGGTCC GCGACGACAC CACCGGCGCC
TGGCACTCCC AGTCCGACTC CGGAGACAAG GTGATCGCGC TGACCGGCGT CTCGAACGGC
GCGTTCCAGG GCGAGGCGTG GGAGATCATC ACCCCCGACG GCACGCGCTA CTACTTCGGG
CAGGACTACC TCCCCGGCGG CACCGGGACC GACGCGGCGA CCGACAGCGT GTGGACCCAG
CCGGTCTACT GCCCCAAGTC CGGCGACGGC CCGCCCTCGG GCAGCTGCTA CGACTCCAGC
AAGGGCACGG GCTCGGTCGT CACCAACATG GCGTGGCGCT GGAACCTGGA CTACACCGTG
GACCCGCACG GCAACCTGCG CACGTACTCC TGGACGCCCG AGACCGACGA ATACGAGATG
GGCTACGGGC AGAACAACAA CAACGGCAAG CTGACTCCCT ACGACCGGGG CGGCTACCTG
ACCTCGATCG GTTACGGCTA CTCGCTGTCG GCGGCGATCG CCGGCGCCAA GCCCGCCGAG
ACCGTGACGT TCGGCACCGA GGAGCGCTGT CTGACCAGCT CGTCGTTCAC GAACTGCGCG
AACTCCAACC TGAGCTCGAC CACCGCCGCG CACTGGCCGG ACGTGCCGTT CAACCAGGTC
TGCGCGGCTG GGGCGACCGC CTGTGCCAAC TACTCCCCGA CCTACTTCTC CACCAAGCGC
CTGACGTCGA TCAGCACCGC GGTCCTGGTC GGCTCGGGGT ACCAGCCGGT GGACAGCTAC
ACGCTGTCCC AGTCCTTCCC GGCGCCCCAG GCCGGCCAGG TCCCGGCCGG ATCCAGCGTC
AGCGCCACGA ATCCCGGCGA CGGCACGGTC GCGGTGATGT GGCTGGACTC GATCCAGCGC
ACCGGCGCGG ACACCCTCGG CGGCGGCGCG GCCGCGCAGC TGCCGAAGAC GGTGTTCACC
GCCGACGAGA TGCCCAACCG GGTCGACGGG AACACCACCG GCGCGGCGGC GCTGTACCGG
CCGCGGCTGA CGGAGATCAC CACCGACTCC GGGGCGCAGA CCGTCATCGC CTACAGCTCG
TCGCAGTGTT CGAGGACGGG CAACAAGCTG CCGGCCTCGC CGGACGCGGA CACGATGAAC
TGCTATCCGC AGTACTGGAC TCCCAACGGC GCCCAGAACC CGGTCCTGGA CTGGTTCACC
ACCTACCAGG TCAGCTCGGT CACGGTGAAC GACCTGGTGG CACCGAGAGC CTGGAACGAG
GTGTCGCTGA CCTCGTACAA CTACGCCGGC GCCGCCTGGC ACCGGGACGA CTCGCCGCTG
ACCCCGGCGG CCCAGCGGAC GTGGAACCAG TTCCGAGGGT TCCGCACGGT CACCGCGACC
ACCGGCGCGT CCTCGGTCCA GTCCACGCCG ACGCAGACCG TGACGACGTT CCTGCAGGGC
ATGGACGGCG ACTATCAGGC CTCTGGCTCC AAGCGCGGTG TCAGCGTCGC CGACACCGTC
GGGGACACGG TCACCGATAA CAACTGGCTG GCCGGCCAGC TCCTCGAGAA GGACACCTTG
CTCGGGGTCG GCGGCGCGGC GCAGAACAAG GAGGTCGGCG GACCCTGGAC CTTCACCCCG
ACCGCCACGG AATCGCAGGC CTCGTCGATG CCCGCGCTGG TGGCCCGGAT GACCGCGGGC
ACCACGGACC GCAAGTACCA GCTCTGGCAC GACGGCACCT GGGAGCAGAC CAAGCTGGCG
GCGACCTTCA ACGCACAGGC GCAACAGGTC ACCTCCGACA CGACCTACTC CGGGCCCTCC
GCGTTGCCGG AACAGTGCAC GACCACCAAG TACGCCACGA ACGCCGCGGC GAACATGGTC
ACCTACCCCG ACGAGTCCCT GACGGTCACC GGCTCCTGCT CGACCAAGCC GTCGGCGACG
GCCACCCAGT CGGACACGCT GACGTTCTAT GACAGCTCCT CGACGCTGGG GTCGCTGGGC
TCGACGGGCA ACGCGACCAT GACCCAGAAG GCTGCGTCGT ACAACGCCTC CGGCGCACCG
GTGTACACCA CCACGGCCAA GGCTCAGTTC GACTCCTACG GCCGGACCAC ATCCGCGACG
GACGCCGACG GCAACACCAC GACGACGGCC TACAGCGCGC CGGGCGCCGC GGCCGACACC
GTGACCGTCA CCAACCCGAT GCACTGGATC ACGAAGCAGA CCCTGGACCC CGGCCGGGGA
CAGGCCGTCT CCAGCACGGA CGTCGACAAC GAGCTGACCA CCAAGACCTA CGACGGTCTG
GGCCGGGTCA CCGCGGTGTG GACGCCGCTG CACAGCCAGG CCGCCAAGGC TCCGGCGGAC
TACACGTACA CCTACGCCGT GACCGGGACG GCGCCGACCG CCGTCAAGAC GTCCACGCTG
CGCGACGACG GCTCGTACGG GGCCGTCATC GCCCTGTACG ACGGGCAGCT GCGGCAGATC
CAGCAGCAGG GCGGCACCGC CGACGGCGAG GTCGGGCGGC TGATCACCGA CACCCACTAC
AACTCGCTCG GCCAGAAGGC GAAGACCACC GACACCTACT ACGAAAAGAC CACGGCGCCG
ACCGCCGCCG TCTTCGTCCC GGCGAACGAC TCGGCCGTGC CGGCCGAGGC CGAGACGCTG
TACGACGGGA TGGGCCGCGC GGCGCAGAGC CTGACCGTCG CGTTCGGCGT GAACCAGTAT
TCGACGCTGA CCGGCTACCG GGGCACCGAC GAGACCGACA CCACGCCGCC CGCCGGCGGC
ACCGCGACCA GCAGCTTCCT CGACGCCGCC GGGAACGTGG ACGCGACCTG GTCCTACCGG
ACCGCCACCG CGACCGGCAA GGCGGCCGAC GCCGAGACGA ACAGCCGCGT CTACACCCCG
GCCGGGCAGC CCTCGACCAT CAAGGACGCG GTCGGCGACA CCTGGTCCTA CGGCTACAAC
CTGCTCGGGC AGAACACCAG CGTGTCCGAC CCGGGTACGG GCCTTGCCAC CTCGGTGTAC
TCCACCGGCG GGAGCCTGCT CAGCCGCACC GACGCGAACG GAGACCAGCT CTCGTACACC
TATGACGCGC TGAAGCGGAA GATCGCCGAG TACGACACCA CCGGCGGCGC GGCCGAGACC
TCGGCGGACC AGATCGGCGC GTGGACCTAC GACACGCTGG CCAAGGGCCA GCCCACGTCG
TCGACCACGT ACACCGACGG CGCCGCCGAC GCGGCGAACA CCTGGACCGA GACCGTCGCC
GGATACACGG CGAAGTACCA GCCGACCGGC GAGACGGTCA CCGTGCCGTC CTCGCAGGGC
GCGCTGGCCG GTACCTACCA GGACTCGAGC CAGTACACCG CCGAGACCTC GCTGCTCGCC
GGCACGCACT ACTTCGCCGA GGGAAACCTG CCCAAGGAAC AGGTGAACTT CGGCTACACG
CCGACCGGAC TGCTGTCGAG CTACGGCAGC CCCTACGCCG CGCTGAACAC AGTGACGTAC
AGCCCGCTGG GGCAGGTGCT GCAGACCAAC TACGGCGCCA ACGGCGACCA GTACGGCCGC
ACCGTGACCT ACGACCCGGC GACCAAGCGC ATGCTGACCA CCACGGACTC GCTGCAGACG
CTCAGCAAGC CGATGCAGTC CGTGGCCTAC ACCTACAACC AGGCCGGAGC GATCACCGCC
GAGAGCAACT CGGTCACCGG GTCTTCGACC CCTGACACCC AGTGCTTCGG GTACGACCAG
CTGAACGAGC TGACCAGCGC CTGGACCGAC TCCGGCGGCG TCACCGCGAC CTCGGCGGCG
GGCAACGCGC AGGTCGACGG CGTGGGCGGC TGCACCGACT CCGCGCCGAC AGCCGGCAAG
GTCACGGGGG GACCCGCACC GTACTGGCAG TCGTACTCCT ACGACGCCCT CGGCGACCGG
ATCGGCGAGA CCAGCCACGA CACGTCGGTG GCCTCGAGCG CGAACACGGT CACGCAGACG
CTGGCGTACA GCGCGTACAA CCCCTCGACC GGCGCCACCG CCGCCGCGTC CACCCCGGAC
GCGGTGCAGT CGGTGACCAC GGCCGGGACG TCCGGCTCGA CCTCCGCGCC CTACACCTAC
TACCCGAACG GAGAGACCGA GAGCCGCCCC GGACAGGCGT TCACCTACAA CGCGATGGGA
CTCACCCAGT CCGTCAAGAA CACCACCACC GGCGTGGCCA GCACGTACAC CTACGACGCG
GACGGCACGC TGCTGCTGCA GAGCGACCCG GCCGCCGCGC AGAACGTGCT GTACCTGCCG
TGGGGTGAGC AGGTCACGCT GAACACATCC GGGAACACCG TCTCCAGCCT GCGCTACATC
AGCGACAGCC CGGACGGCGT CAGCGTGGTG CACTCCTCGG CCGGCACCGT GGGCTACGAG
CTGACCAACA CCAACGGCAC CGCCACGGCC GAGGTCAACG CCTCGAACCT GACGTACAGC
CTGCGGTACT ACGACCCGTT CGGGCAGCAG CGCGGCGCGG CGCCGCCGAG CTGGCCGGAC
CAGCGCGCGT ACCTGGACAA GCCCAGCGAC CCGACCAGCG GCCTGGACCT GCTCGGCGCC
CGGCAGTACG ACCCGGTCAC CGGCCGGTTC CTCAGCGTCG ACTCGGTCCA GGAGAACACC
GACCAGCGCC AGCTGAACGG GTACTCCTAC GCCGGCGACA ACCCGGTCAA CGGTTCGGAC
CCGACGGGGA CCATGCTGGC GTGCGAGGAC GGCCCCGGCA GCGTCTGCTA CTACCCCCAC
CCGGCGCCGC CGAAGAAGAG CGGTTCCTCG TCCAGCTCGT CCTCGGACTC CGGCGACTCC
GGCGACGGCG GGGAGGACCC GTTCTTCCCC ATCTATGAGA AGGTCCGTTC CTACGTCGAG
AAGAACCTGG CACCGCTGGA CGCCGCGGCG TTCGACAAGA TCCTCGAACT GGCTCAGAAC
AAGGCCTCGG AAACCCAGGT CCTGAACACC ATCGACCGGA TGCTGGAGAT CACGGCCGCG
CTGAAGATGG GCAAGCTCGC CGACGGGATC GACACGATCC TGCAGGCGAC GCACTTCGAC
AGCCTCGTCG CGGTCACCCG GGAGGGGACA CCGTTCCTGG CCGCCAGCCG GACGACGGCG
GTGATGGGCC TCATCGCCGA CTACGGCGAC GTCGTCCTGC CGCCGGACAA GGGCGCGGCC
GGCTGGGTGG ACCGCGGCGC CGGCGCGGTC AACGGCGGGC TGCTCATGGC GAACATGGTC
GTCGACGAGA TACCGGTCGC CGGCCAGGTC ATGATGATCG GCACCGGCAT CTACCTCGGC
GGCGACTACC TGTACCACCA CTGGAAGCCG TTCCACAACG CCGTGAACGA CGTCGGGCAC
GGCGTGTCGA GCTTCTTCGG CGGATTGTTC GGCGGTGGTT CCGACTCCAG CGACGCCGCG
CCGAAGCCGC AGTGGCCCAA CGGCTGCGGC GGGTAG
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| Protein sequence | MIGMSPPSSG RRRHARWRHR LTTVAAAGAM LAGSGLNPAQ AAPAGAGKHW QPVATQKTPS
VPGHAGVPAG QPAPATSANH GVPPVAYQAT APVWPAGQAS ATLAAPVPPA TPAAAEPKPA
TGSGGHPTSP PADSSPTAAN SSDTAGPAAK LAGLPVTLAS ADGTTAATVA FAPRAAVAAA
GVDGVILTLS RTDGGRTASP VDLSLDYKGF ATASGGGYAD RLTLVEMPAC ALTTPTVPSC
RAQTPIAAKN DTASGTLSAQ VALSATPMVL AASPQASGGV GDYSATSLSP EGSWSSGGNT
GSFAYSYPIA VPPASGGTAP SVALSYDSGS VDGRTSVTNA QASWIGDGWD YSPGFIERSY
QPCSQDGIKN SGDTCWGGNQ VTLSMSGLSG TLVRDDTTGA WHSQSDSGDK VIALTGVSNG
AFQGEAWEII TPDGTRYYFG QDYLPGGTGT DAATDSVWTQ PVYCPKSGDG PPSGSCYDSS
KGTGSVVTNM AWRWNLDYTV DPHGNLRTYS WTPETDEYEM GYGQNNNNGK LTPYDRGGYL
TSIGYGYSLS AAIAGAKPAE TVTFGTEERC LTSSSFTNCA NSNLSSTTAA HWPDVPFNQV
CAAGATACAN YSPTYFSTKR LTSISTAVLV GSGYQPVDSY TLSQSFPAPQ AGQVPAGSSV
SATNPGDGTV AVMWLDSIQR TGADTLGGGA AAQLPKTVFT ADEMPNRVDG NTTGAAALYR
PRLTEITTDS GAQTVIAYSS SQCSRTGNKL PASPDADTMN CYPQYWTPNG AQNPVLDWFT
TYQVSSVTVN DLVAPRAWNE VSLTSYNYAG AAWHRDDSPL TPAAQRTWNQ FRGFRTVTAT
TGASSVQSTP TQTVTTFLQG MDGDYQASGS KRGVSVADTV GDTVTDNNWL AGQLLEKDTL
LGVGGAAQNK EVGGPWTFTP TATESQASSM PALVARMTAG TTDRKYQLWH DGTWEQTKLA
ATFNAQAQQV TSDTTYSGPS ALPEQCTTTK YATNAAANMV TYPDESLTVT GSCSTKPSAT
ATQSDTLTFY DSSSTLGSLG STGNATMTQK AASYNASGAP VYTTTAKAQF DSYGRTTSAT
DADGNTTTTA YSAPGAAADT VTVTNPMHWI TKQTLDPGRG QAVSSTDVDN ELTTKTYDGL
GRVTAVWTPL HSQAAKAPAD YTYTYAVTGT APTAVKTSTL RDDGSYGAVI ALYDGQLRQI
QQQGGTADGE VGRLITDTHY NSLGQKAKTT DTYYEKTTAP TAAVFVPAND SAVPAEAETL
YDGMGRAAQS LTVAFGVNQY STLTGYRGTD ETDTTPPAGG TATSSFLDAA GNVDATWSYR
TATATGKAAD AETNSRVYTP AGQPSTIKDA VGDTWSYGYN LLGQNTSVSD PGTGLATSVY
STGGSLLSRT DANGDQLSYT YDALKRKIAE YDTTGGAAET SADQIGAWTY DTLAKGQPTS
STTYTDGAAD AANTWTETVA GYTAKYQPTG ETVTVPSSQG ALAGTYQDSS QYTAETSLLA
GTHYFAEGNL PKEQVNFGYT PTGLLSSYGS PYAALNTVTY SPLGQVLQTN YGANGDQYGR
TVTYDPATKR MLTTTDSLQT LSKPMQSVAY TYNQAGAITA ESNSVTGSST PDTQCFGYDQ
LNELTSAWTD SGGVTATSAA GNAQVDGVGG CTDSAPTAGK VTGGPAPYWQ SYSYDALGDR
IGETSHDTSV ASSANTVTQT LAYSAYNPST GATAAASTPD AVQSVTTAGT SGSTSAPYTY
YPNGETESRP GQAFTYNAMG LTQSVKNTTT GVASTYTYDA DGTLLLQSDP AAAQNVLYLP
WGEQVTLNTS GNTVSSLRYI SDSPDGVSVV HSSAGTVGYE LTNTNGTATA EVNASNLTYS
LRYYDPFGQQ RGAAPPSWPD QRAYLDKPSD PTSGLDLLGA RQYDPVTGRF LSVDSVQENT
DQRQLNGYSY AGDNPVNGSD PTGTMLACED GPGSVCYYPH PAPPKKSGSS SSSSSDSGDS
GDGGEDPFFP IYEKVRSYVE KNLAPLDAAA FDKILELAQN KASETQVLNT IDRMLEITAA
LKMGKLADGI DTILQATHFD SLVAVTREGT PFLAASRTTA VMGLIADYGD VVLPPDKGAA
GWVDRGAGAV NGGLLMANMV VDEIPVAGQV MMIGTGIYLG GDYLYHHWKP FHNAVNDVGH
GVSSFFGGLF GGGSDSSDAA PKPQWPNGCG G
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