Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1057 |
Symbol | |
ID | 8332392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 1201430 |
End bp | 1201984 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644954205 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003111824 |
Protein GI | 256390260 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.288723 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACGATG GGGGGCGCGT AGTGCGGGCG GAACAGGAAG AGGACTTCCG ACGGTTCGTG ATCGACAGCC GGCATCGGCT GGTGCGCACG GCCTACGTTC TGACCGGCGA CTACGCCCGA GCAGAGGATC TGGTGCAGAC GGCGCTGGTG CGGACGTACC GCGCCTGGCA CCGGATCGAG CGGCGGGACG TGCCGGAGCT GTACGCGCGG CAGATCGTGA TCCATCTGCA CGCCTCCTGG TGGCGGCGTG TCGCGCACCG CTCCGAACGC CCCGTGGCGT TCCTGCCCGA TGTCGCGACG GCCGACGGCA CTGAAGCCGT CGACCGGCGC GACCAGGTGT GGCGCGCTGT GCTGACCCTA CCGCCGCGCA TGCGGGCGAT CATCGTTCTG CGCTTCCTGG AAGACCTCAA GGAGACCGAG ACCGCCGAGG TTCTCGGATG CTCCGTCGGA ACCGTCAAGT CCCAGACCTC CAGAGCCCTG GCCAAGCTCC GGACCCATCT CGGGACGGAG GCCGCGGCCG AACGGGCCGC GGCGACCACA CGGAGAGCCG GGTAG
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Protein sequence | MDDGGRVVRA EQEEDFRRFV IDSRHRLVRT AYVLTGDYAR AEDLVQTALV RTYRAWHRIE RRDVPELYAR QIVIHLHASW WRRVAHRSER PVAFLPDVAT ADGTEAVDRR DQVWRAVLTL PPRMRAIIVL RFLEDLKETE TAEVLGCSVG TVKSQTSRAL AKLRTHLGTE AAAERAAATT RRAG
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