Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0980 |
Symbol | |
ID | 8332314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 1119144 |
End bp | 1119647 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644954132 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003111752 |
Protein GI | 256390188 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.142363 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0113176 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACG AGGAGGACTT CCGGCAGTTT GCCGCGAGCC GCCAGAAACA GTTGCTGCGC AGCGCGTATC TGTTGTGCGG CGACTGGCAT GGCGCCGAGG ACCTGGTGCA GACCGCCTTC GGGCAGCTGT ACCGGTCATG GCACCGGGTT AGGCGCGTCG AGCATCCGGA CGCCTACGCC AAGCAAGTGC TGTACCGCTG CCACCTGTCG GCGAAACGGA AGCGGCGGTT CACGACCGTG TCCATCGACT CTGTCCTGGA ACCTGCTGCG TCCGGCGACG GTTTTGGAGA CGGCAGCACC GGCGTCCTCT TGGAGGCTCT CGCCGGCCTG CCGGACCGGG CCCGAGCCGT AGTGGTGCTG AGGTTCTGGG AGGACTACTC GGTCGCGCAG ACCGCTGAAG CCCTCGGCGT ATCGCAGGGG ACTGTGAAGA GTCAGTCCTC GCGCGCCCTG GCGCTGCTGC GAGAGCGGAT CGGCGACTCG TTCAGCGACA TCGGTCAAGA CTGA
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Protein sequence | MSDEEDFRQF AASRQKQLLR SAYLLCGDWH GAEDLVQTAF GQLYRSWHRV RRVEHPDAYA KQVLYRCHLS AKRKRRFTTV SIDSVLEPAA SGDGFGDGST GVLLEALAGL PDRARAVVVL RFWEDYSVAQ TAEALGVSQG TVKSQSSRAL ALLRERIGDS FSDIGQD
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