Gene Caci_0710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0710 
Symbol 
ID8332040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp828742 
End bp829386 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content71% 
IMG OID644953862 
Productprotein of unknown function DUF1707 
Protein accessionYP_003111486 
Protein GI256389922 
COG category[S] Function unknown 
COG ID[COG4758] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.537634 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.113725 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCGCAG CCTTTCCGGC CAACGATCCC CACGGAACCA TGCGCGCCTC CGACGCCGAC 
CGGGACCGCG TGGCGGACGC CCTCCGGGAG GCTTACGCCG AGGGCCGCCT GGACGCCGAC
GAACACAACG AGCGCATCGA CCTCGCTTAC AAGGCCAAGA CCCTCGGCGA GCTGTCGCCG
CTGGTGTCCG ACCTGCCGCA GCGCCACATC ACCTCTCCCG CCGGCGCGCC CCCCTCGGTC
CCGGCGATGC CCGCGGACTA CGCCCCGGGA TCGAAGATCA CTGCCGTCTT CGCCGAGCAG
AAGCGCGGCG GACGCTGGCT TGTCCCCTCG CAGACCATCG CCGCGGCCGT CTTCGGCTCG
GTGACCATCG ACCTGCGCGA GGCCGTGCTG ACCCAGCGCG AAGTGGTCAT CACCGCCAAC
GCGGTGTTCG GCTCCATCGA GATCAAGGTG CCGCACGGCG TCGTGGTGCG CGACGAGGGC
ACCGCGGTGT TCGGCTCGCG CAGCGGCTCG GACCGCAACG CCGCCGGCGA CGTGCCGATC
ACGCCGGAGT CGCCGGTCGT GGTGCTGCGC GGGATGGCGC TGTTCGGCGA GGTGTCGGTG
CGGTATCCCA AGCCGAAGAA GCTGGGCAAG TTCCTCGGGC GCTGA
 
Protein sequence
MPAAFPANDP HGTMRASDAD RDRVADALRE AYAEGRLDAD EHNERIDLAY KAKTLGELSP 
LVSDLPQRHI TSPAGAPPSV PAMPADYAPG SKITAVFAEQ KRGGRWLVPS QTIAAAVFGS
VTIDLREAVL TQREVVITAN AVFGSIEIKV PHGVVVRDEG TAVFGSRSGS DRNAAGDVPI
TPESPVVVLR GMALFGEVSV RYPKPKKLGK FLGR