| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0616 |
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| Symbol | |
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| ID | 8331945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 718584 |
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| End bp | 720947 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644953768 |
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| Product | Microbial collagenase |
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| Protein accession | YP_003111393 |
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| Protein GI | 256389829 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00460764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.253983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCACC GAACACGCCT GCCCGGAATC GCCGCCGCGG TGCTCGCCGC GGTGGCGGTC
GCCGGGATGA CCGGGGTGGG AGCGGCCTCC GCCGCCCCGC GTCCGGCCGC CGCCTCGGTC
GCCCCGACCG TGAGCCACGC GAACACGAAC ACGAACACGA ACAAGAACGC CACGCCGAAG
GGTTCCGCCG ACCCGGCCAT CGCCGGGAAG TCCGTGGTCG CGAAGACCGG AAAGCCGGTC
GGCGACCTCG CGCCGCGCGC ACCGATCGGC GGCAGCGCCG ACGGAACCAA GACCGGCGTT
GCGCAGACCG GCGCCACGCA AACCAGCGCC GCAAAGCAGT CCCCGGCCGC CAAGACCCCC
GCCAAAACCC CCGCAGCCCA GTCCTGCACC CCCGCGGACT TCGCCTCCCG CTCCGGCAGC
ACCCTCAGCG CCTTCGTCAA GGCATCGACC ACCGACTGCA TCAATACCCT GTTCTCGGTC
ACCGGCTCCA ACGCTTCGGC GATCTTCAGC GAAGCCAAGA TGGAGACCAT CGCAGGGTCC
TACAAGACCG CCGCCGCCAG CTACCCGGGC ACCGACGCGA CGAGCGTCCA GCAGCTCGTG
CTGTTCCTGC GCGCCGGGTA CTACGTGCAG TACAACAGCA ACGGCTCGAT CCCGGCCTAC
GGCCAGGCGC TCGCCACGCT GGTCGAGGGC GGCCTCGACG CCTTCTTCGC CGGCTCGCAC
GCCCTGGACG TCAACGACAA CAACGGCCCG GTCCTCGGTG AGACGATCAT CCTCACCGAC
AGCGCCGACG AACAGGCCCG CTACCTCAGC ACCTACCAGC GGATCCTGAA CGCCTACACC
AGTTCCTACA ACGCCTACTC GACGATGCTG AACGCGGTGA ACGACGTCTA CACGCCGCTG
TTCCGAGGCC ACCAGTTCCC GGCGTTCGTC ACGGCCGTCA CCGCGAACCC GAGCATCATC
GACACCCTGA ACAGCTTCGC GCTGAACCAC AAGAACCTGC TGGGAGGGGA CAACTCCTAC
CTGGACTCCA ACGCCGGGCT GGAGATGAGC CGGTTCGTTC AGCACACGGC GCTGCAGGCC
AAGGTGCGTC CGCTGATGAA GGGTCTGCTC GCGGCCTCGT CGATGACCGG ACCGACGGCG
CCGCTGTGGG TCGCGGTCGC CGGCAACGCC GACTACTACG ACCAGGCGAA CTGCGCCTAC
TACAACGTGT GCGATCTGGC CGCCAAGCTC ACCGCCGCCG TGCTCACCAC GACGACGCAC
TGCGACGCCA GCCACACCGT GCTGTCCCAG GCGCTGACCG CCTCCGACAC CAGCGCCGTG
TGCGCGAGCA TCCTGGGCCA GTACTCGTAC TTCCACACCG TGGTGCACGA CAGCGGCCCG
ATTCCCGGGC AGTACGACCA GAACTTCGTG CTGACCGTGT TCGCCTCGCC CACGGACTAC
CAGACCTACG CCGGACCGAT CTACGGCGTG GACACGGACA ACGGCGGCAT CACCCTGACC
GGGGATCCGA CCGATCCGTC CAACATCGTC CGCTCGATCA TGTACCAGTG GGACACCGAC
AACGGCTTCG TGGCGCGCGT GTGGAACCTG AACCACGAGT TCACCCACGC GCTGGACGCC
GAGTACGACA CCAAGGGCGA CTTCACCGCC GAGATCGTGG TCCCGGACAT CTGGTGGATC
GAGGGCGTCG CGGAGTACGT CTCGTACAGC TACCGCGATG TCACCGACAC CGAGGCGGTG
AGCGAGGCGG CGACCCACCG GTACGCGCTG AGCACCCTGT GGCAGAGCTC GTATGACAAC
AGCGACGAGA CACGCACCTA CCCCTGGGGC TACCTCGCCG TCCGCTACAT GATGGAGCGG
CACCCCGCCG ACATCGCCAC ACTCCTGGCG AAGTTCCGCG TCGGCGATTA CCAGGGCGCG
TACGCCTTCT ACGGCACGAC CATCGGCACG GCGTACGACG CCGACTTCAA TTCCTGGCTC
GACCAGTGCG CGGCCGGCGC CTGCCAGGCC GGCGGCGGAA CCACGCCGCC GCCCCAGAAC
TGCTCCGACC CCGACACCCG GGCGATGGAC CAGAACTGCT CGCGCACCGG CGAGTCGGCG
GCGGCCGGCG CGATCGACTA CTTCTACATC GACATTCCCG CCGGGACGTC GTCGCTGACC
ATCACCACCA CCGGTGGCAG CGGCACGGCG TACCTGCTGT ACAACCCCTC GACGTGGGCG
ACCCCCACCG CGTACACGCA GGGCTCGTTG AACAACGGCA CGACACAGAG CCTGACGATC
ACCGATCCGC CATCCGGCTA CCGGTACATC AGCCTGTACG GGCAGACCGC CTTCAGCGGG
GTGACCATCA CCACGTCCTA CTGA
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| Protein sequence | MRHRTRLPGI AAAVLAAVAV AGMTGVGAAS AAPRPAAASV APTVSHANTN TNTNKNATPK
GSADPAIAGK SVVAKTGKPV GDLAPRAPIG GSADGTKTGV AQTGATQTSA AKQSPAAKTP
AKTPAAQSCT PADFASRSGS TLSAFVKAST TDCINTLFSV TGSNASAIFS EAKMETIAGS
YKTAAASYPG TDATSVQQLV LFLRAGYYVQ YNSNGSIPAY GQALATLVEG GLDAFFAGSH
ALDVNDNNGP VLGETIILTD SADEQARYLS TYQRILNAYT SSYNAYSTML NAVNDVYTPL
FRGHQFPAFV TAVTANPSII DTLNSFALNH KNLLGGDNSY LDSNAGLEMS RFVQHTALQA
KVRPLMKGLL AASSMTGPTA PLWVAVAGNA DYYDQANCAY YNVCDLAAKL TAAVLTTTTH
CDASHTVLSQ ALTASDTSAV CASILGQYSY FHTVVHDSGP IPGQYDQNFV LTVFASPTDY
QTYAGPIYGV DTDNGGITLT GDPTDPSNIV RSIMYQWDTD NGFVARVWNL NHEFTHALDA
EYDTKGDFTA EIVVPDIWWI EGVAEYVSYS YRDVTDTEAV SEAATHRYAL STLWQSSYDN
SDETRTYPWG YLAVRYMMER HPADIATLLA KFRVGDYQGA YAFYGTTIGT AYDADFNSWL
DQCAAGACQA GGGTTPPPQN CSDPDTRAMD QNCSRTGESA AAGAIDYFYI DIPAGTSSLT
ITTTGGSGTA YLLYNPSTWA TPTAYTQGSL NNGTTQSLTI TDPPSGYRYI SLYGQTAFSG
VTITTSY
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