Gene Caci_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0550 
Symbol 
ID8331877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp635461 
End bp636594 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content66% 
IMG OID644953702 
Productacyl-CoA dehydrogenase domain protein 
Protein accessionYP_003111329 
Protein GI256389765 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.193039 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00272664 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATGTTCG ACAGGGAGCT TCTCGACACG ATAGTCAACG AGGTGGTGGC TCCGGCTGCG 
GCCGAGGTTG ACACGAACGC GGCATTCCCC CGCGAGGGAG TGGATGCGCT GGCCCGGGCC
GGGGTGTTGG GCCTCACGGT GCCGAAGCAG TTCGGAGGCG CGGGTGAAGG CCTACGTTCG
GCTGTGAATG TCATTCGGAC GCTGTCCTCG GCGTGTGGAT CGACCGCCAT GGTTGTCGCG
ATGCACTACA GCGGGACAGC GGTCCTCGCA TCGCAGGAAC GTGCCGATGT GCTTCAGGAC
ATAGGCGATG GCCGGCACCT AACCACGTTG GCGTTCTCCG AAGTCGGTTC GCGCAGTCAC
TTCTGGGCAC CGCTGAGCAC TGCGAAGGCT GACGGGGACG ACGTCCTGCT TGATGCTAGG
AAGAGCTGGG TGACGTCCGC CAGCCAAGCC GACAGCTACG TTTGGTCGAG CCGGCCGATG
GCGGCCGATG GCCCTATGTC GCTGTGGTTC GTGCCCTCAG ACACCCCCGG GCTGTCGATT
CCCCGAGCGT TTGACGGTAT GGGATTGCGG GGTAACGACT CGTCACCCGT GACGGCGGAC
GGGGTCAGGG TGTCCCAGAC TTCTCTGCTC GGCGACGATG GCAAGGGATT CGACTTGGCC
ATGGCGGCGG CATTGCCAGT CTTCCTCGTG CTTAATGCCG CAGCTGGGAT CGGATTGATG
GACGCCCTGC TCGCCGAGGC GGTCAAGCAC CTCTCCGCAA CTAGGCTCGA CCACCTGAAC
CAGTCGCTCG CCCAGCAATC GCCGGCGCGG CTGACGCTCG CCCGGATGCG GATCGAGGCC
GACCGGACAC GGTGTCTGCT CGATGAGACG CTATCCGCGC TCGAACAGGA ACGCCCCGAC
GCACAGCTGT TTCTGTTGGA AGTGAAGGCG GCCACGGACG AGTCGGCCGC GCTCGTCGCG
GACCTCGCGA TGAAGGTGTG TGGAGGCGCC GCATTCCGCA AGGAGTTGGG GATCGAGCGG
CGCTTCCGCG ACTCGCGCGC TGCACGGGTG ATGGCCCCCA CAACTGACGT ACTCGAGGAT
TTCGTGGGGC GGGCGCTGTG CGGCCTCCCG CTGTTCGACG GGCCCGCCGC ATGA
 
Protein sequence
MMFDRELLDT IVNEVVAPAA AEVDTNAAFP REGVDALARA GVLGLTVPKQ FGGAGEGLRS 
AVNVIRTLSS ACGSTAMVVA MHYSGTAVLA SQERADVLQD IGDGRHLTTL AFSEVGSRSH
FWAPLSTAKA DGDDVLLDAR KSWVTSASQA DSYVWSSRPM AADGPMSLWF VPSDTPGLSI
PRAFDGMGLR GNDSSPVTAD GVRVSQTSLL GDDGKGFDLA MAAALPVFLV LNAAAGIGLM
DALLAEAVKH LSATRLDHLN QSLAQQSPAR LTLARMRIEA DRTRCLLDET LSALEQERPD
AQLFLLEVKA ATDESAALVA DLAMKVCGGA AFRKELGIER RFRDSRAARV MAPTTDVLED
FVGRALCGLP LFDGPAA