Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0550 |
Symbol | |
ID | 8331877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 635461 |
End bp | 636594 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644953702 |
Product | acyl-CoA dehydrogenase domain protein |
Protein accession | YP_003111329 |
Protein GI | 256389765 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.193039 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00272664 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGTTCG ACAGGGAGCT TCTCGACACG ATAGTCAACG AGGTGGTGGC TCCGGCTGCG GCCGAGGTTG ACACGAACGC GGCATTCCCC CGCGAGGGAG TGGATGCGCT GGCCCGGGCC GGGGTGTTGG GCCTCACGGT GCCGAAGCAG TTCGGAGGCG CGGGTGAAGG CCTACGTTCG GCTGTGAATG TCATTCGGAC GCTGTCCTCG GCGTGTGGAT CGACCGCCAT GGTTGTCGCG ATGCACTACA GCGGGACAGC GGTCCTCGCA TCGCAGGAAC GTGCCGATGT GCTTCAGGAC ATAGGCGATG GCCGGCACCT AACCACGTTG GCGTTCTCCG AAGTCGGTTC GCGCAGTCAC TTCTGGGCAC CGCTGAGCAC TGCGAAGGCT GACGGGGACG ACGTCCTGCT TGATGCTAGG AAGAGCTGGG TGACGTCCGC CAGCCAAGCC GACAGCTACG TTTGGTCGAG CCGGCCGATG GCGGCCGATG GCCCTATGTC GCTGTGGTTC GTGCCCTCAG ACACCCCCGG GCTGTCGATT CCCCGAGCGT TTGACGGTAT GGGATTGCGG GGTAACGACT CGTCACCCGT GACGGCGGAC GGGGTCAGGG TGTCCCAGAC TTCTCTGCTC GGCGACGATG GCAAGGGATT CGACTTGGCC ATGGCGGCGG CATTGCCAGT CTTCCTCGTG CTTAATGCCG CAGCTGGGAT CGGATTGATG GACGCCCTGC TCGCCGAGGC GGTCAAGCAC CTCTCCGCAA CTAGGCTCGA CCACCTGAAC CAGTCGCTCG CCCAGCAATC GCCGGCGCGG CTGACGCTCG CCCGGATGCG GATCGAGGCC GACCGGACAC GGTGTCTGCT CGATGAGACG CTATCCGCGC TCGAACAGGA ACGCCCCGAC GCACAGCTGT TTCTGTTGGA AGTGAAGGCG GCCACGGACG AGTCGGCCGC GCTCGTCGCG GACCTCGCGA TGAAGGTGTG TGGAGGCGCC GCATTCCGCA AGGAGTTGGG GATCGAGCGG CGCTTCCGCG ACTCGCGCGC TGCACGGGTG ATGGCCCCCA CAACTGACGT ACTCGAGGAT TTCGTGGGGC GGGCGCTGTG CGGCCTCCCG CTGTTCGACG GGCCCGCCGC ATGA
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Protein sequence | MMFDRELLDT IVNEVVAPAA AEVDTNAAFP REGVDALARA GVLGLTVPKQ FGGAGEGLRS AVNVIRTLSS ACGSTAMVVA MHYSGTAVLA SQERADVLQD IGDGRHLTTL AFSEVGSRSH FWAPLSTAKA DGDDVLLDAR KSWVTSASQA DSYVWSSRPM AADGPMSLWF VPSDTPGLSI PRAFDGMGLR GNDSSPVTAD GVRVSQTSLL GDDGKGFDLA MAAALPVFLV LNAAAGIGLM DALLAEAVKH LSATRLDHLN QSLAQQSPAR LTLARMRIEA DRTRCLLDET LSALEQERPD AQLFLLEVKA ATDESAALVA DLAMKVCGGA AFRKELGIER RFRDSRAARV MAPTTDVLED FVGRALCGLP LFDGPAA
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