Gene Caci_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0406 
Symbol 
ID8331733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp452188 
End bp452937 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content69% 
IMG OID644953572 
ProductMgtC/SapB transporter 
Protein accessionYP_003111199 
Protein GI256389635 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.452939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.474699 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAT CGATCTTGTG GGAGGAACCG ACCGGGCAGG GCTGGACGCA GGTCGGAGAG 
CTGACGACGG CCCTGGTGCT GTCCTCGGCG ATCGGGCTGG AACGCGAGAT CCGGCAGAAG
GCCGCGGGCT TGCGCACCTA CACGATCATC GGCCTGGGAG CCGCGCTGTT CATGCTGGTG
AGCAAGTACG GCTTCACGGA CGTGCTGCGC CCGGGACTGG TCCAGCTCGA CCCCTCGCGG
GTCGCGGCGC AGATCGTCTC CGGACTCGGC TTCATCGGCG GCGGCGTGAT CTTCATGCGC
CGCGACAGCG TCCGCGGCCT GACCACCGCG GCCGCGATGT GGTTGACCGC CGGCGTCGGC
GCGGCGGCGG GCGCCGGCCT GGGACTGCTG GCGTTGCTCA CGACGGTCGC GTATTTCGTG
GTGTGCTACG GATTGCGCCC GCTGACCCAC TGGATGCCCG CACTGCGCAC GCCGCCGGTG
ACCTACCGCA TCGAGTACCA GGACGGCAGA GGGTTACTCC GCACCATCCT CGACATCTGC
ACCGGCGCCG GCTTCTTCGT CGCCTCCTTC AGCGGCACGG GACACGACGA GCGGGACGCC
CAGCGCGAGC CCGGCGCGCA TCCGCACACG GTCGAGGTCG TGCTCACGCT GCACGGCCGC
GGCAACGCCA ACGCGCTGAC CGAGCAGTTG GTCGACACCT CGGGGATCGT CGCGGTCGCG
TACAACCACG AAGACGACGA GTTCACATGA
 
Protein sequence
MSASILWEEP TGQGWTQVGE LTTALVLSSA IGLEREIRQK AAGLRTYTII GLGAALFMLV 
SKYGFTDVLR PGLVQLDPSR VAAQIVSGLG FIGGGVIFMR RDSVRGLTTA AAMWLTAGVG
AAAGAGLGLL ALLTTVAYFV VCYGLRPLTH WMPALRTPPV TYRIEYQDGR GLLRTILDIC
TGAGFFVASF SGTGHDERDA QREPGAHPHT VEVVLTLHGR GNANALTEQL VDTSGIVAVA
YNHEDDEFT