Gene Caci_0380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0380 
Symbol 
ID8331707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp423278 
End bp423928 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content71% 
IMG OID644953547 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003111174 
Protein GI256389610 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.50033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGCAGA CGGAGACCGG AACCCCCAGG CAGCGCTATC GCGCGCAGGT GCAGGAGGAG 
ATCAAGCAGC ACGCGTGGGA GCAGATCGCG ACCGCGGGCG CCTCCGCCCT GTCGCTGAAC
GCGATCGCCA AGCAGATGGG GATGAGCGGC CCGGCGCTGT ACCGGTACTT CGCCAATCGC
GACGAGCTGA TCACGGCGCT CATCCGGGAC GCCTACCAGA GCATGGCCGA CGCGATGCGC
GCGGCGGTCG CGGACGGCGC CGGTCTCAGG GGTCTGGCTC GGACGCTGCG CGAGTGGGCG
CTGGAGGACC CCCAGCGCTA CCTGCTCATC TACGGCACGC CGGTACCCGG CTACCAGGCG
CCGGAGGACA CCACGCGGCT GGCCAACGAC GTGATGGCGT TGCTGCTCGA CGCCAGCAGC
GCCGAAGGGC TCGGCGCCCT GCCGCCGTCG CCGGTGCAGA CACATCTGGA GCAGCACAGC
CCGTGGGCTG GAGCGCACGC CGGCGAAGGC ACGACACTGC ACCGCGCCGT CATCCTGTGG
ACGCGGCTGC ACGGGGTGCT GTCGCTGGAG CTGGCCGGGC ATTTCGCCGG CATGGAATTC
GACCCGGCGC TGCTGTACGC GGCCGAGGTC GAGGCCGTCG CAGGTTACTG A
 
Protein sequence
MVQTETGTPR QRYRAQVQEE IKQHAWEQIA TAGASALSLN AIAKQMGMSG PALYRYFANR 
DELITALIRD AYQSMADAMR AAVADGAGLR GLARTLREWA LEDPQRYLLI YGTPVPGYQA
PEDTTRLAND VMALLLDASS AEGLGALPPS PVQTHLEQHS PWAGAHAGEG TTLHRAVILW
TRLHGVLSLE LAGHFAGMEF DPALLYAAEV EAVAGY