Gene Caci_0269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0269 
Symbol 
ID8331596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp303169 
End bp303735 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content70% 
IMG OID644953436 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003111063 
Protein GI256389499 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.764981 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGGTG AGAAGCGTGA CCGGGACCGT GACAGAGACC GTGATGGGAA CGACAGACGC 
GGAATCGAGG AAGCCGAGTT CCGCGAGTAC ATGGTCAGCC GGTGGGGTGG TCTGGTCCGG
TTCGCCTACG GTCTGACCGG CGACCGCGGC CACGCCGAGG ACCTGGCACA GACCGCGCTG
GCGAAGGCGT ACGCGTCCTG GTCCAGAGTG CGGCGTGCGG ACGACCCGGA CGCCTACGTC
CGCAGGATCC TGATCAACGC CAACCACCGC CGCTTCCGCA AACGCCGGGT CGACGAGCAC
GCCGGTCCCG GCGCCGCGGC GCGCGAGCCT GTCGTCACCG ACGGCACCGC CGCGTTCGAC
CAGCGCGAGG CACTGGTCGC CGCGCTCATG GAGCTGCCGC CGAAACAGCG CGCGGTGGTC
GTGCTCCGCT ACTGGGACGG CCTGACGGAG ACCCAGGCCG CCACGGTGCT CGGCTGCTCG
GTCGGCACCG TGAAGAGCCA GGCCTCGCGC GCCCTGGCCA AGCTCCGCAC CAGCACACAG
CTTCAGGACG GGAAGGTGAT CTCGTGA
 
Protein sequence
MRGEKRDRDR DRDRDGNDRR GIEEAEFREY MVSRWGGLVR FAYGLTGDRG HAEDLAQTAL 
AKAYASWSRV RRADDPDAYV RRILINANHR RFRKRRVDEH AGPGAAAREP VVTDGTAAFD
QREALVAALM ELPPKQRAVV VLRYWDGLTE TQAATVLGCS VGTVKSQASR ALAKLRTSTQ
LQDGKVIS