| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0125 |
|---|
| Symbol | |
|---|
| ID | 8331450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 128742 |
|---|
| End bp | 129254 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644953292 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003110921 |
|---|
| Protein GI | 256389357 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.684135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCGG ACGAGGACGG CCATGACGCC GAGTTCCACG CATTCATGGT CGGCCGCTGG
CCGTCGCTGG TCCGGTTCGC CTACGGCCTG ACCGGCGACC ACGGCCACGC CGAGGACCTG
GCGCAGGCCG CGCTGGCGAA GGCGCTCGTG TCGTGGTCCC GGGTCCGCCG CGCGGACGAT
CCGGATGCTT ATGTCCGCCG CATTCTGATC AACCTCAACC GCCGGCGGTT CCGCAGACGC
CGCGTGGAGG AGCACGTCGG CGGCGAGGCG CCGGAACCGG CCGCCCCCGA CAGCACAGAC
CAGCTCGACC AGCGCGCGAC GCTGATCCCG GCGCTGATGG AGCTGCCGCC CGGCCAGCGC
GCGGTCGTCA TCCTGCGGTA CTGGGACGGC CTGACCGAGA CGCAGACGGC GGCGATTCTG
GGCTGCTCGG TCGGCAACGT GCGCAGCCAG GCTTCCCGCG CGCTGGCTCG CCTGCGCACC
AATCCGCGGC TGCACGATGG GAGCGCGTCA TGA
|
|---|
| Protein sequence | MRADEDGHDA EFHAFMVGRW PSLVRFAYGL TGDHGHAEDL AQAALAKALV SWSRVRRADD
PDAYVRRILI NLNRRRFRRR RVEEHVGGEA PEPAAPDSTD QLDQRATLIP ALMELPPGQR
AVVILRYWDG LTETQTAAIL GCSVGNVRSQ ASRALARLRT NPRLHDGSAS
|
|---|
| |