Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0030 |
Symbol | |
ID | 8331354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 30098 |
End bp | 30643 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644953196 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003110826 |
Protein GI | 256389262 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCCCG AGGACGAAGA CGAGTTCCGC CGCTTCACGG CCGCGCGCTG GCCGGGGCTG GTGCGGACGG CGTATCTGTT GACGGGGGAC CTCGGTCACG CTGAGGACTT GGCGCAGACC ACGCTGATCA AGGCGTATCG CTCGTGGCAT CGCGTGTGCC GGGTCGAGGA TGTCGACGCC TACGTCCGCA AGATCCTGAT CAACGCCAAC CGCAGCCGGT TCCGCTCGAA GCGGCCGCTG GAGTACAGCG TCGCCGCCGT GCCCGAGTAC CCTGCCTGGC CGCCGGACGA CGGTTCCGGC GTCGAGGAAC GGACCGTGTT GTTCGCCGCG CTCGCCACGC TGCCGCCGAG ACAGCGCGCG ATCGTGGTGC TGCGGTACTG GGAGGACTTG GCGGAAGGCG AGGTCGCCGC CCTGGTCGGG TGCTCTGTAG GGACGGTCAA GAGCCAGGCC TCGCGAGCGT TGGCGAAGTT GCGGAAGGAC GCGCGCCTCG CGGGGCTCTC CGCGTTTCAG GAGCCCGCGG CGGCGATGAA GGGAGCACAG ACATGA
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Protein sequence | MRPEDEDEFR RFTAARWPGL VRTAYLLTGD LGHAEDLAQT TLIKAYRSWH RVCRVEDVDA YVRKILINAN RSRFRSKRPL EYSVAAVPEY PAWPPDDGSG VEERTVLFAA LATLPPRQRA IVVLRYWEDL AEGEVAALVG CSVGTVKSQA SRALAKLRKD ARLAGLSAFQ EPAAAMKGAQ T
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