Gene Caci_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0006 
SymbolgyrB 
ID8331329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7225 
End bp9210 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content67% 
IMG OID644953171 
ProductDNA gyrase subunit B 
Protein accessionYP_003110802 
Protein GI256389238 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.925878 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGGACG TAGAACCGAC CGGGGGTAGC ACCCCAAGCC TCGATGGCAT CTATAACGCT 
GACTCCATCA GTGTCCTGGA GGGGTTGGAA GCCGTCCGGA AACGGCCGGG CATGTACATC
GGATCCACCG GGGAGCGCGG CCTGCACCAC CTGGTGTACG AGATCGTCGA CAACTCCGTG
GACGAGGCGA TGGCCGGCTA CGCCGACACC ATCGAGGTCT GGCTGCTCGC CGACGGCGGC
GTGAAGGTCG TCGACAACGG CCGCGGCATC CCGGTCGGCA TCAACACCAA GACCGGCAAG
TCCGCGCTGG AAGTCGTGAT GACGATCCTG CACGCCGGCG GCAAGTTCGG CGACGGCGGC
TACAAGGTCT CCGGCGGTCT GCACGGCGTC GGCGTCTCGG TGGTGAACGC GCTGTCCAGC
CGGGTCGAGG TCGAGGTGCA CACCGACGGC TTCGTGTGGA ACCAGGTCTA CAAGCACGGC
GTGCCCGAGA CCGAGGTGCA GAAGGGCGGC CCGGCCGCCG ACACCGGCAC CTCCACGATC
TTCTGGGCCG ACGTCGACAT CTTCGAGACC ACGGTCTACT CCTTCGAGAC CCTCTCGCGC
CGCTTCCAGG AGATGGCCTT CCTGAACAAG GGGCTGACGA TCTCGCTGAC CGACGAGCGT
CCGGAGTTCC GCGACGAGAA CGGCGAGCAG CGGTCGGTGA AGTACCACGC CGAGGGCGGC
ATCGCCGACT TCGTGCGGCA CATCAACTCC CGCAAGGGCG AGCCGGTCCA CCCGAACGTC
ATCGACTTCG AGGGCGAGGA CAAGGACCGC ACCCTGGCCG CCGAGATCGC CCTGCAGTGG
AACAGCCAGT ACTCCGAGTC GATCTACACC TTCGCCAACA ACATCAACAC GCACGGCGGC
GGTACCCACG AAGAGGGCTT CCGCGCCGCG CTGACGACGC TGATCAACAA GTACGCGCGC
GACCAGAAGC TGCTCAAGGA GAAGGACGAC AACCTCGCCG GCGAGGACAT CCGCGAGGGC
TTGACCACCA TCGTCTCGGT GAAGCTCGCC GAGCCGCAGT TCGAGGGCCA GACCAAGGAC
AAGCTGGGCA ACCCCGAGGC CAAGACGTTC GTGCAGCGCC TGGTCTACGA GAAGCTCGGC
GAGTGGCTGG AAGAGAACCC GAACGAGGCC CGCGAGGTCA TCCGCAAGAC GATCCAGGCC
TCGACCGCGC GCATGGCCGC GCGCAAGGCC CGCGAGCTCA CCCGCCGCAA GGGTCTGCTG
GAGTCCTCCT CGCTGCCGGG CAAGCTGTCC GACTGCCAGT CCAACGACCC GACGAAGACC
GAGATCTTCA TCGTCGAGGG TGACTCCGCC GGCGGCTCGG CCCGCTCCGG GCGCGACCCG
ATGACCCAGG CCATCCTGCC GATCCGCGGC AAGATCCTGA ACGTGGAGAA GGCGCGCATC
GACAAGGTGC TGCAGAACAC CGAGGTCCAG GCGCTGATCT CGGCGCTGGG CACCGGGGTG
CACGACGACT TCGACATCAG CCGGCTGCGC TACCACAAGA TCATCCTGAT GGCCGACGCC
GACGTCGACG GCGCGCACAT CAACACCCTG CTTCTCACGC TGCTGTTCCG GTTCATGAAG
CCGCTGGTCG AGGCCGGGCA CGTGTACCTG GCCGCACCGC CGCTGTACAA GGTGAAGTGG
ACGAACAACG ACTTCAACTA CGCCTACTCC GACCGCGAGC GCGACCAGCT GCTGGAAGCC
GGCGTCGGGG CCGGCAAGCG GCGGAAGGAC GAGACCGTCC AGCGCTTCAA GGGCCTCGGC
GAGATGAACG CCGAGGAGCT GCGGATCACC ACCATGGACC GCGAGCACCG CATCCTGCGC
CAGGTCACGC TCGACGACGC GGCCCAGGCC GACGACCTGT TCTCGGTCCT GATGGGCGAG
GACGTCGAGG CCCGCCGCAA CTTCATCCAG CGCAACGCGA AGGACGTCAG GTTCCTGGAC
ATCTGA
 
Protein sequence
MADVEPTGGS TPSLDGIYNA DSISVLEGLE AVRKRPGMYI GSTGERGLHH LVYEIVDNSV 
DEAMAGYADT IEVWLLADGG VKVVDNGRGI PVGINTKTGK SALEVVMTIL HAGGKFGDGG
YKVSGGLHGV GVSVVNALSS RVEVEVHTDG FVWNQVYKHG VPETEVQKGG PAADTGTSTI
FWADVDIFET TVYSFETLSR RFQEMAFLNK GLTISLTDER PEFRDENGEQ RSVKYHAEGG
IADFVRHINS RKGEPVHPNV IDFEGEDKDR TLAAEIALQW NSQYSESIYT FANNINTHGG
GTHEEGFRAA LTTLINKYAR DQKLLKEKDD NLAGEDIREG LTTIVSVKLA EPQFEGQTKD
KLGNPEAKTF VQRLVYEKLG EWLEENPNEA REVIRKTIQA STARMAARKA RELTRRKGLL
ESSSLPGKLS DCQSNDPTKT EIFIVEGDSA GGSARSGRDP MTQAILPIRG KILNVEKARI
DKVLQNTEVQ ALISALGTGV HDDFDISRLR YHKIILMADA DVDGAHINTL LLTLLFRFMK
PLVEAGHVYL AAPPLYKVKW TNNDFNYAYS DRERDQLLEA GVGAGKRRKD ETVQRFKGLG
EMNAEELRIT TMDREHRILR QVTLDDAAQA DDLFSVLMGE DVEARRNFIQ RNAKDVRFLD
I