Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0006 |
Symbol | gyrB |
ID | 8331329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 7225 |
End bp | 9210 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644953171 |
Product | DNA gyrase subunit B |
Protein accession | YP_003110802 |
Protein GI | 256389238 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.925878 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGGACG TAGAACCGAC CGGGGGTAGC ACCCCAAGCC TCGATGGCAT CTATAACGCT GACTCCATCA GTGTCCTGGA GGGGTTGGAA GCCGTCCGGA AACGGCCGGG CATGTACATC GGATCCACCG GGGAGCGCGG CCTGCACCAC CTGGTGTACG AGATCGTCGA CAACTCCGTG GACGAGGCGA TGGCCGGCTA CGCCGACACC ATCGAGGTCT GGCTGCTCGC CGACGGCGGC GTGAAGGTCG TCGACAACGG CCGCGGCATC CCGGTCGGCA TCAACACCAA GACCGGCAAG TCCGCGCTGG AAGTCGTGAT GACGATCCTG CACGCCGGCG GCAAGTTCGG CGACGGCGGC TACAAGGTCT CCGGCGGTCT GCACGGCGTC GGCGTCTCGG TGGTGAACGC GCTGTCCAGC CGGGTCGAGG TCGAGGTGCA CACCGACGGC TTCGTGTGGA ACCAGGTCTA CAAGCACGGC GTGCCCGAGA CCGAGGTGCA GAAGGGCGGC CCGGCCGCCG ACACCGGCAC CTCCACGATC TTCTGGGCCG ACGTCGACAT CTTCGAGACC ACGGTCTACT CCTTCGAGAC CCTCTCGCGC CGCTTCCAGG AGATGGCCTT CCTGAACAAG GGGCTGACGA TCTCGCTGAC CGACGAGCGT CCGGAGTTCC GCGACGAGAA CGGCGAGCAG CGGTCGGTGA AGTACCACGC CGAGGGCGGC ATCGCCGACT TCGTGCGGCA CATCAACTCC CGCAAGGGCG AGCCGGTCCA CCCGAACGTC ATCGACTTCG AGGGCGAGGA CAAGGACCGC ACCCTGGCCG CCGAGATCGC CCTGCAGTGG AACAGCCAGT ACTCCGAGTC GATCTACACC TTCGCCAACA ACATCAACAC GCACGGCGGC GGTACCCACG AAGAGGGCTT CCGCGCCGCG CTGACGACGC TGATCAACAA GTACGCGCGC GACCAGAAGC TGCTCAAGGA GAAGGACGAC AACCTCGCCG GCGAGGACAT CCGCGAGGGC TTGACCACCA TCGTCTCGGT GAAGCTCGCC GAGCCGCAGT TCGAGGGCCA GACCAAGGAC AAGCTGGGCA ACCCCGAGGC CAAGACGTTC GTGCAGCGCC TGGTCTACGA GAAGCTCGGC GAGTGGCTGG AAGAGAACCC GAACGAGGCC CGCGAGGTCA TCCGCAAGAC GATCCAGGCC TCGACCGCGC GCATGGCCGC GCGCAAGGCC CGCGAGCTCA CCCGCCGCAA GGGTCTGCTG GAGTCCTCCT CGCTGCCGGG CAAGCTGTCC GACTGCCAGT CCAACGACCC GACGAAGACC GAGATCTTCA TCGTCGAGGG TGACTCCGCC GGCGGCTCGG CCCGCTCCGG GCGCGACCCG ATGACCCAGG CCATCCTGCC GATCCGCGGC AAGATCCTGA ACGTGGAGAA GGCGCGCATC GACAAGGTGC TGCAGAACAC CGAGGTCCAG GCGCTGATCT CGGCGCTGGG CACCGGGGTG CACGACGACT TCGACATCAG CCGGCTGCGC TACCACAAGA TCATCCTGAT GGCCGACGCC GACGTCGACG GCGCGCACAT CAACACCCTG CTTCTCACGC TGCTGTTCCG GTTCATGAAG CCGCTGGTCG AGGCCGGGCA CGTGTACCTG GCCGCACCGC CGCTGTACAA GGTGAAGTGG ACGAACAACG ACTTCAACTA CGCCTACTCC GACCGCGAGC GCGACCAGCT GCTGGAAGCC GGCGTCGGGG CCGGCAAGCG GCGGAAGGAC GAGACCGTCC AGCGCTTCAA GGGCCTCGGC GAGATGAACG CCGAGGAGCT GCGGATCACC ACCATGGACC GCGAGCACCG CATCCTGCGC CAGGTCACGC TCGACGACGC GGCCCAGGCC GACGACCTGT TCTCGGTCCT GATGGGCGAG GACGTCGAGG CCCGCCGCAA CTTCATCCAG CGCAACGCGA AGGACGTCAG GTTCCTGGAC ATCTGA
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Protein sequence | MADVEPTGGS TPSLDGIYNA DSISVLEGLE AVRKRPGMYI GSTGERGLHH LVYEIVDNSV DEAMAGYADT IEVWLLADGG VKVVDNGRGI PVGINTKTGK SALEVVMTIL HAGGKFGDGG YKVSGGLHGV GVSVVNALSS RVEVEVHTDG FVWNQVYKHG VPETEVQKGG PAADTGTSTI FWADVDIFET TVYSFETLSR RFQEMAFLNK GLTISLTDER PEFRDENGEQ RSVKYHAEGG IADFVRHINS RKGEPVHPNV IDFEGEDKDR TLAAEIALQW NSQYSESIYT FANNINTHGG GTHEEGFRAA LTTLINKYAR DQKLLKEKDD NLAGEDIREG LTTIVSVKLA EPQFEGQTKD KLGNPEAKTF VQRLVYEKLG EWLEENPNEA REVIRKTIQA STARMAARKA RELTRRKGLL ESSSLPGKLS DCQSNDPTKT EIFIVEGDSA GGSARSGRDP MTQAILPIRG KILNVEKARI DKVLQNTEVQ ALISALGTGV HDDFDISRLR YHKIILMADA DVDGAHINTL LLTLLFRFMK PLVEAGHVYL AAPPLYKVKW TNNDFNYAYS DRERDQLLEA GVGAGKRRKD ETVQRFKGLG EMNAEELRIT TMDREHRILR QVTLDDAAQA DDLFSVLMGE DVEARRNFIQ RNAKDVRFLD I
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