Gene Caci_0005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0005 
Symbol 
ID8331328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6140 
End bp6658 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content73% 
IMG OID644953170 
Productprotein of unknown function DUF721 
Protein accessionYP_003110801 
Protein GI256389237 
COG category[R] General function prediction only 
COG ID[COG5512] Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.44696 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.799003 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATCCAC AGCCTGTGGA CAACGGTTCC GGCGCCGAGG GCGGTGACCC TCAAGACTCT 
GGCGTCGACC TGGCCCGCGC CGCTTTAGCC GCCGCACGCG CCCGCGGCAA GGACAACGGC
GCCGGGTGGA GCGGCAACCG CCGGCGTAAC AGCAACTCCG GCCAGCGCTC GGGATCCGGT
CCCGACGAAC GCGATCCGCA GCTGCTGTCC TCGGCGATCC CCAGGATGAT CGAGGCCAGG
GGCTGGAGTG TGCCGGCGGC GGTCGGCGGC GTGATGGGCC GCTGGGGCGA GATCGTGGGC
AGCCACATCT CGGCGCACTG CACCCCGGTG GAGTTCCACG ACGGCGTCCT CATGGTCCGC
ACCGATTCCG CGGCCTGGGC CACCGAGCTG CGCATGCTGG CGCCGCAGCT GCTCGCGAAG
CTCAACGCCG AGCTGGGGAC GTCCCGCGCG GCCCACGGCG GCCGGGACGC CGCCGGCGCC
ATCGCGACCC TGAAAGTGGT CGGACCCGGC GGTCGCTGA
 
Protein sequence
MNPQPVDNGS GAEGGDPQDS GVDLARAALA AARARGKDNG AGWSGNRRRN SNSGQRSGSG 
PDERDPQLLS SAIPRMIEAR GWSVPAAVGG VMGRWGEIVG SHISAHCTPV EFHDGVLMVR
TDSAAWATEL RMLAPQLLAK LNAELGTSRA AHGGRDAAGA IATLKVVGPG GR