| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5025 |
|---|
| Symbol | |
|---|
| ID | 3519170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 5340470 |
|---|
| End bp | 5341105 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637287464 |
|---|
| Product | polysaccharide biosynthesis/export protein |
|---|
| Protein accession | YP_271664 |
|---|
| Protein GI | 71278212 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATC GCTTTGCCAG CACATTAAAA GTTGGTCTAC TATTGCTAGT AATTTTTCTT
TCAGGCTGTA CTACACACAA TACGCTACCT AGTGCAACTT TACACCCATC CAATACAGAA
AATATAAATA GCTATAAATA TTTAATCGGC TCTGGCGATG TGCTTAATAT TTTTGTTTGG
CGTAATCCCG AAGTTTCAGG CTCATTTGTA GTACGCCCTG ATGGCATGAT TACCACCTCC
TTAGTTGAAG ATATCGAAGT CAGTGGTAAA ACGCCTACTG AATTAGCGCG TTCAATTGAA
AAAATCTTAG CAACTTATCT ACGAGACCCT ATTGTCACGG TCACCGTTGA AAATTTTGTT
GGTCCTTTTA GTGAGCAAAT TCGTGTTATT GGTGAAGCCG CACAGCCACG AGCTATTAAT
TATACTCAGC ATATGACCTT GCTCGATGTT ATGATTCAAG TTGGCGGTTT AACCGAATTT
GCTGATGGTA ACGATGCTGT ACTCATACGT ATTGAAAGTG GCACACAAAA CCAATATCAA
GTAATGATAG ACCAGCTACT TAAAGATGGA GAGATAAGTG CCAATGTTGA TATGTTACCG
GGCGATATTA TCATTATCCC TGAAGCTTGG TTTTAA
|
|---|
| Protein sequence | MDNRFASTLK VGLLLLVIFL SGCTTHNTLP SATLHPSNTE NINSYKYLIG SGDVLNIFVW
RNPEVSGSFV VRPDGMITTS LVEDIEVSGK TPTELARSIE KILATYLRDP IVTVTVENFV
GPFSEQIRVI GEAAQPRAIN YTQHMTLLDV MIQVGGLTEF ADGNDAVLIR IESGTQNQYQ
VMIDQLLKDG EISANVDMLP GDIIIIPEAW F
|
|---|
| |