Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4758 |
Symbol | |
ID | 3523337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 5033660 |
End bp | 5034313 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637287197 |
Product | transglycosylase SLT domain-containing protein |
Protein accession | YP_271402 |
Protein GI | 71277833 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACGAT TTTCAAGGGA ACAATTTCAA TGTTGCCGCT TAGGTTTGTT CCTAATTTTA GCTACGTCTG TAATCGTCAG TTACGCTTTT GAAAAAAAAA CAGCAAATAT TTACACCTAT AAATCAACCT CAGGGGTAAC GTCTTTCTCT GATATCGAAC CACTTGATGT TGATTTTAGT CGTTATCGAT TTGATTGTTA TGCCTGCGAA GTTGATTCAT TAATTGACTG GCGTAAAGCA ACCCTTTATT TACAGCCTTA TAAGAATGAT ATAAATAAAG CTGCGTTGAA ATATGATATT GACCCTGCTT TTGTTCGAGC GGTTATTCAC GCAGAGTCTC ATTTTAATCC CCAAGCTGTG TCGAAGCAGG GCGCGCAAGG TTTGATGCAG TTAATGCCTG CAACAGCGAA AGAGCTTGGC GTACGGAATT CGTTAAGTGC CCAGCAGAAT ATTAAGGGAG GCGTTAAACA TTTAGCACGC CTACTCAGAA AATATAAGGG TGATAATAAA TTAGCTTCAG CAGCTTATAA TGCAGGGGAA GGCGCAGTTA AACGTCACGG AGGTATTCCG CCCTATAAAG AAACCCAAGT GTATGTAGAG CGGGTCGGTA TTTTACACCA GCGTTATGGA CGCTTTTCTC ACCTTAATAA ATAA
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Protein sequence | MRRFSREQFQ CCRLGLFLIL ATSVIVSYAF EKKTANIYTY KSTSGVTSFS DIEPLDVDFS RYRFDCYACE VDSLIDWRKA TLYLQPYKND INKAALKYDI DPAFVRAVIH AESHFNPQAV SKQGAQGLMQ LMPATAKELG VRNSLSAQQN IKGGVKHLAR LLRKYKGDNK LASAAYNAGE GAVKRHGGIP PYKETQVYVE RVGILHQRYG RFSHLNK
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