| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4696 |
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| Symbol | |
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| ID | 3519152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4968256 |
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| End bp | 4970304 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637287135 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_271340 |
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| Protein GI | 71278233 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTTT TAGATAAAGG ATTAGCTCAA GGTGAAATTG ATACCGGCAT ATTGGTCTTA
AATCTCAATG GCGAATTAGA GGAAGTAAAT GAACAGTTTC TCGCTATGAC AGGATTTCTA
AAAGAAAATG TACTTGGTCA AAATATAGAT GAAATTGATA ACTGTTCGGC AAAGAAAATA
TTATCAGGGA AAAGTGCTAT TTATGGACAT TATCATTCAA TACTCACTCG TAAAGACGGT
AGTAACCTCC AAGTAGAAAC TTGCTACTTT CGCCAGCAGA CTCAAAATTC AGCACAAATA
TTACTATTTA TTCAAGAAAG CAATTATGCC GAACTAACAA AAACTTCTAT TATTGAACAA
ATATTCGATC ATACCAATGA AGCGATCATT GTGACTGATA ATCAAGGATT GATACAAACG
GTCAATAAAA GCTTCTCAAA TATAACCGGG TACAGTGAAG AAGAAGTTAT TGGTAAAACA
CCTGCCATTT TAAATTCAGG GAAACAGGAT AAATATTTTT ATAAAAAGTT TTGGCAACAA
ATAATTGACC AAGGTTCTTG GCAAGGGGAG ATTTGGAATA AACGTAAAAA TGGGGAAGTG
TATCCTGAAT GGTTAAATAT CAGCAGTATT AGAAATAAAG AGAGTCAAAT TTCTAATTAT
ATTTGCCAAT TTACAGATAT CACCAATCGA AAAAAGTCTG AAGAAGAGCT GCACTTTCAT
GCCTACCATG ATTCATTAAC TAGTTTACCT AACCGGCATT TACTTTTTGA GAAATTGAAC
CATTTATGCG TACTTCATCA AGAACAACCG ACCTATTTCG CTGTGCTTTT TTGTGATCTA
GACCGCTTTA AGATGATTAA TGACTCGCTG GGTCATGATG TAGGGGATGA GCTTTTAAAG
AGTGTTGCTA ACCGGTTTGA AGCAAAGTTA CGAGATAATG ACATTATAGC GCGTACTGGT
GGAGATGAGT TTATTGTTGT TATTGAAGGC GAGAAAGCAC TAAAAAATCT AGATAAAATA
TGCTTGCAGA TACTCTCTCT TTTTGAAGTC CCTTTTCAAA CTAAATATGG TGAATTTAAG
ACAACAATTA GTATTGGCGT TAGCCAATTT CCTTCAGATT CTGAGGATGT GAGGGAGCTT
ATTTCATTCG CTGATGTTGC CATGTATAAG ATAAAAAAGT CAGGAGGTAA TCATTACTCA
TTTTTTGATG TTAAAGAGAA GGCTCTTATA CAACAAAGGC TAGAGCTTGA AAGTGAAATT
ACCCAAGCGA TTGAAAAAGA TCAATTTGCA GTTTGGTACC AACCACAAGT AAATACACAA
ACCCACGAAG TATATGGTGT TGAGTGTTTA ATTAGGTGGA ATCACCCTGA GCAAGGGTTA
ATCCCTCCTG ATTTATTTAT TCCAATCGCT GAAGCTAACG GATCTATTAA AGAGCTTGGT
TATTTTGTTT TAAAAACGGC ATGCCAGCAA TTAAGACAGT GGCGTATTAA AAATATCTTT
ACTGGGGTTA TGGCAATTAA TGTTTCACTA CGACAATTTG AACGAAATGA CCTTCTCGCC
CAAGTGAAAA AGACATTAGT AGATGAAATG TTACCTGCTG AGTCTATTGA ACTTGAAGTG
ACAGAATCAC TCTTCTCAGA AGACAATAAC TACCATACCC CGATTCTATG TGCCTTAAGA
GAGTTAGGGG TTAAAGTCGC CATTGATGAC TTCGGTACTG GGTATTCCTC CTTACAACGT
TTGAAAAGCT TACCTATTGA TAATGTAAAA ATTGATAAGT GTTTTGTTGA TAACATCGAA
CATTGTCCTG AAGATGTTGC GATTGTGATG GCAACCATTT TGTTGTCAAA AACCTTTAAG
GTAGATGTGA TTGCTGAAGG AATAGAAACA CAAGAACAAG CCGATAAATT AAGTGACTTA
GGTTGTTTCA ATCAACAAGG TTATCTCTAC AGTCGGCCTC TTAAAGCACA TGATTTTGAA
GTTTGGCTCG CTGACTTTTC TTTGAAAAAC AATGAAATAA AAACACTTAA AGCGATAAAT
CACTTATGA
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| Protein sequence | MTFLDKGLAQ GEIDTGILVL NLNGELEEVN EQFLAMTGFL KENVLGQNID EIDNCSAKKI
LSGKSAIYGH YHSILTRKDG SNLQVETCYF RQQTQNSAQI LLFIQESNYA ELTKTSIIEQ
IFDHTNEAII VTDNQGLIQT VNKSFSNITG YSEEEVIGKT PAILNSGKQD KYFYKKFWQQ
IIDQGSWQGE IWNKRKNGEV YPEWLNISSI RNKESQISNY ICQFTDITNR KKSEEELHFH
AYHDSLTSLP NRHLLFEKLN HLCVLHQEQP TYFAVLFCDL DRFKMINDSL GHDVGDELLK
SVANRFEAKL RDNDIIARTG GDEFIVVIEG EKALKNLDKI CLQILSLFEV PFQTKYGEFK
TTISIGVSQF PSDSEDVREL ISFADVAMYK IKKSGGNHYS FFDVKEKALI QQRLELESEI
TQAIEKDQFA VWYQPQVNTQ THEVYGVECL IRWNHPEQGL IPPDLFIPIA EANGSIKELG
YFVLKTACQQ LRQWRIKNIF TGVMAINVSL RQFERNDLLA QVKKTLVDEM LPAESIELEV
TESLFSEDNN YHTPILCALR ELGVKVAIDD FGTGYSSLQR LKSLPIDNVK IDKCFVDNIE
HCPEDVAIVM ATILLSKTFK VDVIAEGIET QEQADKLSDL GCFNQQGYLY SRPLKAHDFE
VWLADFSLKN NEIKTLKAIN HL
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