Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4667 |
Symbol | gcdH |
ID | 3520413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4932604 |
End bp | 4933788 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637287106 |
Product | glutaryl-CoA dehydrogenase |
Protein accession | YP_271311 |
Protein GI | 71279950 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAATT CAGTACTAAA CAATTGGGAT GACATACTTC TACTTAACGA CCAATTATCA GAAGATGAAC GAATGGTGCG TGATATGGCA CATACCTTTT GCCAAGAAGA GTTAATGCCT GGTGTATTAA TGGCTAACCG TAATGAGGAC TTTGATCCAA ATATCATGCG TCAGTTTGGT GAGCTTGGGT TATTAGGTGC AACCATTGAT GGTTATGGTT GTTCAGGTGT TAATTACGTA AGTTATGGCT TAGTCGCCCG TGAAGTAGAA CGAGTAGACA GTGGTTATAG AAGTGCAATG AGCGTGCAAT CCTCATTAGT TATGCATCCA ATTAATGCGT ACGGTACTAC TGAACAAAAA GAAAAATATT TACCTAAGCT TGCTACGGGT GAATACATAG GTTGTTTTGG TTTAACCGAG CCAGGTTCAG GTTCTGATCC TTCAAGTATG ATCACTCGCG CTAAGAAAGT AGATGGCGGT TATCGTTTAA CGGGCTCAAA AATGTGGATT ACCAATTCAC CTATCGCCGA TGTTTTTGTA GTGTGGGCAA AAAATGAAGC TGAAGGAAAT CAAATTTGTG GTTTTGTGCT AGAAAAAGGC ATGGCAGGTT TATCAGCGCC AAAAATTGAA GGTAAAATAT CTTTACGTAC CTCAATTACG GGTGAAATCG TAATGGATAA CGTTTTTGTG CCAGAAGAAA ATATGTTTCC TGAAATACGC GGTTTAGCTG GACCATTTGG TTGTTTAAAT ATGGCGAGAT ATGGTATTTC TTGGGGGGCA TTGGGCGCTG CTGAGTTCTG TTGGCATGGT GCACGTCAGT ACGGTTTAGA TCGTATTCAA TTTAAACGTC CGCTGGCACA AACACAGTTA TTCCAAACTA AACTCGCTAA TATGCAAACC GAAATCTCGT TAGGTTTACA GGCATCACTA CGTGTTGGTC GTATTATTGA TACCAAAAAG TGGGACCCAA CCATGATATC AATGGTTAAA CGTAACAACT GTGGTAAATC ACTTGATATT GCTCGTATGG CGCGTGATAT GCACGGCGGC AACGGTATTT CAGATGAGTT TCATGTTATT CGTCATATGG TTAACTTAGA AACGGTAAAT ACCTATGAAG GGACGTATGA TGTACATGGT TTAATACTCG GTCGTGCTCA AACGGGTTTA CAAGCATTTT ACTAA
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Protein sequence | MTNSVLNNWD DILLLNDQLS EDERMVRDMA HTFCQEELMP GVLMANRNED FDPNIMRQFG ELGLLGATID GYGCSGVNYV SYGLVAREVE RVDSGYRSAM SVQSSLVMHP INAYGTTEQK EKYLPKLATG EYIGCFGLTE PGSGSDPSSM ITRAKKVDGG YRLTGSKMWI TNSPIADVFV VWAKNEAEGN QICGFVLEKG MAGLSAPKIE GKISLRTSIT GEIVMDNVFV PEENMFPEIR GLAGPFGCLN MARYGISWGA LGAAEFCWHG ARQYGLDRIQ FKRPLAQTQL FQTKLANMQT EISLGLQASL RVGRIIDTKK WDPTMISMVK RNNCGKSLDI ARMARDMHGG NGISDEFHVI RHMVNLETVN TYEGTYDVHG LILGRAQTGL QAFY
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