Gene CPS_4654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4654 
Symbol 
ID3519147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4914946 
End bp4917234 
Gene Length2289 bp 
Protein Length762 aa 
Translation table11 
GC content40% 
IMG OID637287093 
Productsensory box protein 
Protein accessionYP_271298 
Protein GI71278228 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.787491 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAAA TAGCGAACAA AGAAACACAG CTACAAAAAG AGATTGAGCA ATTACGTTCA 
GAGCTTGTCG CAGCACATCT AAGTAAAGAC GTTCGTACCG CGGAACTTCT TAATAGTGAA
GAGCGCTTTG CTCTGGCTAT GCGAGGTGCA TCGGATGGTC TGTGGGATTG GGATTTAGCT
ACGGATGATG TTTATTACTC CCCTCGCTGG AAAAGTATGC TGGGTTACAG TGAACATGAG
CTCGAAAATA CGTTAAGTAC CTGGGCTGCA ATGGTTCATG TTGATGATAA AGATTTTGTG
CTAAAGAATG TTCATAAATT CTTATCTGGG GAAGTAGACA CATTTGAAGT TGAAATGCGT
ATGCGCCATA AAGTAGGCCA TGACGTTTTT ATTCGCTCTC GTGCTTTTAA AGTAACCCGC
GGTGAGAATA ATGAGACAAT ACGTTTAATT GGTACCCATG TTGATATAAC ACAACAAAAA
AAATCAGAAT TTTTCAATGA AAGAAATACC AAAATTCTTG AGTTAATTGC CAAAGGCAAG
CCCGCCTCTA AAATCTATGC TGAAATTGCG TTAATGTACG AAGAGCGTCA CTCTGGATTA
CGTTGTTCAA TGCTCGAATT AAAGGGGGGG AAGCTGTTAC ATGCGGGTGC ACCTAGCCTA
CCAAAATCTT ATTGCAAAGC AGTACATGGT CTTGAATATG GCCCACAAGT TGGCTCCTGC
GGTACATCTA CTTATACCGG AAAACGAGTA CTTGTCGAAA ATATTGCAAC TGATCCTAAG
TGGGCTGACT TAAAGTACGT AGCACTTCCT TATGGTATGC GCAGTTGTTG GTCAGAACCT
ATTAAAAGCT CTTCTGGAAA AGTATTAGGA GCTTTTGGTA TGTATCATGA CTATCCGGCA
TTGCCTAACG AACAAGAATC TAATGATCTT ACATCAGCAG CTCGACTTGC TGGTATTGTC
ATGGAGCGAG AACAAAATCA AAAACGTATT CAAAACTTAG CCTATACCGA TGAGCTAACT
AAGCTTTCCA GCCGCCCCCA TTTTTATATA AACATTGAAG AGTTAGTAAA AATATCAGCA
CGTGAAAAAA ATAAGTTTGG CCTGTTATAT ATCGATCTTG ATAATTTTAA GACGGTTAAC
GATAGCCTAG GGCATGACGT TGGAGACTTA CTCCTTAAGA AAGTTGCACA GCGTTTAAAA
AGCGCATGTC GTGAAATTGA TTATATTGCT CGCCTTAGTG GCGATGAATT TTGTATTGCC
GTTAATAATG TGATGGATGA CTACGGTGCT GCTCACGTTG CGCAACGTTG TCTTGAACTG
ATATCAAAAC CTGTAGAGCT AGCTGGAAGA AAGTTTACAC CAGCCTGTAG CATTGGTATT
GCACACTATC CCGACGATGG AATCGATCTG CAAACTATAT TAAAAGCAGC AGATACTGCG
CTGTATGCGG CGAAGGATCT TGGAAAAAAT AGGTTTGCTT TTTATAAGAA AGAGCTAACC
GATAAAGCAG AATACCGTTT TAAAATAGAA CAACATTTAA GAGAAGCGAT AGAACAACAA
CAATTGTCAC TCGTTTATCA ACCAAAAGTT GATATTAAAT CGGGCAACAT CATAGGCGTT
GAAGCTTTAT CTCGTTGGAA TCATCCACTG CTCGGTCAGG TTTCTCCAGT AGACTTTATC
AGCATGGCCG AACAAATCGG CATGATAAAA CCACTCACTG AATGGGTCTT GAAAACAGCT
TGTAACCAGG CAACGTTGTG GAAGGAAGCT GGTTTTTCTT CAATTATAAT AGCTGTTAAT
ATATCACCAA GTCATTTTCT TGATAGTGAT CTGGTGCCAC TGATCAAGCG TGTTATTAAA
GAAACAGGAA TGTTGCCGGG TGATCTTGAA CTAGAAGTGA CTGAAGGGGT GATACAGACT
AACCCAGAAA ATCTTGCCGT TTTTGAACAT TTAAAAGAGC TGGGTATATT ACTGGCAATT
GATGATTTCG GCGTTGGTTA TTCATCCTTC GCCTCACTGA AACATCTTAA TGTAGACTAC
TTAAAAATTG ATAAATATTT TATCGATGAC ATTCTTGTCG ACCATAAAGC AAAACTTTTG
GTTGGTTCGA TGATTGAAAT GGGTCATAAC CTTGAGCATA AAATTACAGC TGAAGGTATT
GAAAGCGAAG AACAAGCGAC TATGCTTCAG GAGCTTGGTT GCGATTATGC ACAGGGGTAT
TTTTTTAGTA AACCCGTTAG TGCCAATCAA ATTTCAAAAT TATTAGGTAG AAAATTAACA
GGACAGTAA
 
Protein sequence
MTEIANKETQ LQKEIEQLRS ELVAAHLSKD VRTAELLNSE ERFALAMRGA SDGLWDWDLA 
TDDVYYSPRW KSMLGYSEHE LENTLSTWAA MVHVDDKDFV LKNVHKFLSG EVDTFEVEMR
MRHKVGHDVF IRSRAFKVTR GENNETIRLI GTHVDITQQK KSEFFNERNT KILELIAKGK
PASKIYAEIA LMYEERHSGL RCSMLELKGG KLLHAGAPSL PKSYCKAVHG LEYGPQVGSC
GTSTYTGKRV LVENIATDPK WADLKYVALP YGMRSCWSEP IKSSSGKVLG AFGMYHDYPA
LPNEQESNDL TSAARLAGIV MEREQNQKRI QNLAYTDELT KLSSRPHFYI NIEELVKISA
REKNKFGLLY IDLDNFKTVN DSLGHDVGDL LLKKVAQRLK SACREIDYIA RLSGDEFCIA
VNNVMDDYGA AHVAQRCLEL ISKPVELAGR KFTPACSIGI AHYPDDGIDL QTILKAADTA
LYAAKDLGKN RFAFYKKELT DKAEYRFKIE QHLREAIEQQ QLSLVYQPKV DIKSGNIIGV
EALSRWNHPL LGQVSPVDFI SMAEQIGMIK PLTEWVLKTA CNQATLWKEA GFSSIIIAVN
ISPSHFLDSD LVPLIKRVIK ETGMLPGDLE LEVTEGVIQT NPENLAVFEH LKELGILLAI
DDFGVGYSSF ASLKHLNVDY LKIDKYFIDD ILVDHKAKLL VGSMIEMGHN LEHKITAEGI
ESEEQATMLQ ELGCDYAQGY FFSKPVSANQ ISKLLGRKLT GQ