Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4494 |
Symbol | rsmC |
ID | 3523004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4738827 |
End bp | 4739900 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637286934 |
Product | ribosomal RNA small subunit methyltransferase C |
Protein accession | YP_271142 |
Protein GI | 71282529 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.187247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTTGCC CTATGTCATT GTCAAACCCT AGCCAAATAT TGTTACGTAA TAGTGAATTA CTTGTAGCTA AAGTTCCTTT ATTTATTAAC TTACCTGAAG ATGGTTTCAT TGAGGCTTAT ACAGAGATTC ATAAACCAGA CACTATCCAT TGCTTTAATA CAAATTTCAT TGATTATCAG GCAATTACCA AAAAGCATTG CAGTCCAACA AAGACTAAAA ATGTTAAGGC AACTTTTGCC AGCACATATC AAACAACAAG CTGTCATGAT CTTGTGATAA TAGCGTTTCC TAAAAGTAAA GCTGAACTCA ACTTCACGCT TGCTATGATT ACTCATTGCA TAAATGATGA AACAAAAATA ATACTGGTTG GCGAGAAAAA AGGCGGTATA CAGTCTGCAG CTAAATTAAC TCAACATATA TTTTCTTGTT GTCAAAAAGT CGATGCTGCA CGCCATTGTC TGCTTTTTGT TGGTCTATTT CAGCCAGAAA GGTTATCAGA TGTTTTCAAC CTGCAAGATT GGTTCAAAAA ATACCAAATT ACTGTAGAAG GTATTGAGCT AACAATAGCT TCTTTACCGG GTGTTTTTAG TCAGCAAAAG CTTGATGTTG GTACCGCATT ATTACTAAGT AATTTACCGA GTAAAATGAC AGGAAAAGTA CTCGATTTTG GTTGTGGTGC AGGAGTAATC AGTTGCTTTA TTGGCAAGAA ATTTAGCGGT ACAAACTTAT CTCTATTAGA TGTTAGCGCT TTGGCATTAA CCTCAGCACA AGAGAGTTTA GCTTTAAACG GTCTATCGGG TAATGTATTC CCATCAAATA GCTTATCGGA TGTTAACGAA CACTATCAAC ACGTTGTTTC AAACCCTCCA TTTCATCAAG GTGTTAAAAC GCACTACCAA GCCAGTGAAG ACTTTTTAGC CGGAATAAAT AAAAAACTTA ACAAACAAGG TAACATTACG ATAGTAGCCA ACAGTTTTTT ACGTTATCAA CCGATCATGG AAACACACAT TGGTAATACT CGCGTGATAA CAAAAGACAA AGGGTTTACT ATTTACCGAG CTCAGCTATC ATAA
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Protein sequence | MSCPMSLSNP SQILLRNSEL LVAKVPLFIN LPEDGFIEAY TEIHKPDTIH CFNTNFIDYQ AITKKHCSPT KTKNVKATFA STYQTTSCHD LVIIAFPKSK AELNFTLAMI THCINDETKI ILVGEKKGGI QSAAKLTQHI FSCCQKVDAA RHCLLFVGLF QPERLSDVFN LQDWFKKYQI TVEGIELTIA SLPGVFSQQK LDVGTALLLS NLPSKMTGKV LDFGCGAGVI SCFIGKKFSG TNLSLLDVSA LALTSAQESL ALNGLSGNVF PSNSLSDVNE HYQHVVSNPP FHQGVKTHYQ ASEDFLAGIN KKLNKQGNIT IVANSFLRYQ PIMETHIGNT RVITKDKGFT IYRAQLS
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