| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4448 |
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| Symbol | pilC |
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| ID | 3522905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4685644 |
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| End bp | 4686903 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637286888 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | YP_271096 |
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| Protein GI | 71282431 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.04892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTATCA CAACAAAAAA AAAATCAGCT AAAGATAGAA CTAAAGTTAA AGAGCAAGAT
GTCTTTGTTT GGCATGGGGT TAACCGTAAA GGAAAAAAAA TTAGTGGTGA ACTTTCTGCT
AAGAGTATTA TTGAGCTAAA AAATCAGCTG CGTAAACAAG GCATAGTACC AAGTCGTGTT
AAGAAAAAAG CTAAACCATT ATTTGGTTTA GGTAGCGGAG ATAAAGCAAT AACTCCTATG
GACATTGCTG TTATTACCAG ACAAATAGCC ACTATGTTAG GTGCTGGTGT TCCGCTAGTT
CAGACTATTG AAATGATAGG CAAGGGGCAT AATAACGGTA AGATGCGCAT GCTTCTTGGA
GATATCGCCA CTAAACTTTC TTCTGGTATC CCTTTATCAG ACTGTTTACG TGATCACCCA
CTCTATTTCG ATGACCTTTA TTGTGATTTA GTCGCCTCTG GGGAGCAATC AGGTGCACTA
GAAACTATTT ACGACCGTAT TGCTACCTAC AAAGAAAAAG GTGAAGCATT AAAAAGTAAA
ATTAAAAAAG CCATGACTTA CCCTATTGCG GTGTTAGTGG TTGCCTTTAT CGTAACATCA
ATACTGCTTA TCTTTGTGGT ACCTGTTTTC CAGGAGATAT TTGCCAGTTT TGGCGCTGAA
CTCCCTGCTT TTACCCTAAT GGTGATTGCT ATTTCTGAAT TTATGCAGGC CTATTGGTAC
TTTGGTTTAG CTGGACTTTA TTTAGCATTT TTCTTATTTA AACGTGCCCA CAGAAATAAC
CAAAAATTAC GAGATAAGGT TGATAAAAAC ATACTAAAAT TACCTGTTAT TGGAGATTTA
TTAGAGAAAG CAGCCGTTGC TCGCTACGCG AGAACATTAT CAACGACTTT TGCTGCAGGT
GTTCCTTTAA TTGATGCACT AGAGTCAGCC GCAGGTGCAT CAGGCAATGC CGTATTCCGT
GATGCAATAT TAGAAGTACG CGCTGAGGTG TCTTCGGGAA TGCAAATGAA TTTAGCTATG
CGTAACTGTA AAATATTCCC AGATATGGTT ATACAAATGG TGGCTATTGG TGAAGAGTCT
GGTGCTGTAG ATGATATGTT ATCAAAAGTA GCTAATGTAT ACGAACAGCA AGTTGATGAT
GCTGTTGATG GTTTAACCGC ACTGTTGGAG CCGATGATTA TGGCCGTATT AGGTGTCGTT
ATTGGTGGTT TAATTATTGC TATGTACTTA CCAATATTTG AAATCGGTAA GATTGTATAA
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| Protein sequence | MAITTKKKSA KDRTKVKEQD VFVWHGVNRK GKKISGELSA KSIIELKNQL RKQGIVPSRV
KKKAKPLFGL GSGDKAITPM DIAVITRQIA TMLGAGVPLV QTIEMIGKGH NNGKMRMLLG
DIATKLSSGI PLSDCLRDHP LYFDDLYCDL VASGEQSGAL ETIYDRIATY KEKGEALKSK
IKKAMTYPIA VLVVAFIVTS ILLIFVVPVF QEIFASFGAE LPAFTLMVIA ISEFMQAYWY
FGLAGLYLAF FLFKRAHRNN QKLRDKVDKN ILKLPVIGDL LEKAAVARYA RTLSTTFAAG
VPLIDALESA AGASGNAVFR DAILEVRAEV SSGMQMNLAM RNCKIFPDMV IQMVAIGEES
GAVDDMLSKV ANVYEQQVDD AVDGLTALLE PMIMAVLGVV IGGLIIAMYL PIFEIGKIV
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