Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4417 |
Symbol | |
ID | 3522748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4654159 |
End bp | 4656651 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286858 |
Product | putative ABC transporter, permease protein |
Protein accession | YP_271066 |
Protein GI | 71282275 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.56334 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTAT TCAAAAAGTC CTTATATCAA GGAATAACAC GGGTCTTTTC ACTGCCCCGC CTAAGCGTGC CACTAATTTT AACACTTGGC TTAACATTAG GCGCAGTATT AAGTGTTATT TCAATTTCAT CGACCTTGTT GTATCAACCG CTGCAAGGCA TAGAAAATGA GGATTCGTTG CAAACCTTTG ATTATCGTTT TAAAATGTCA GATACCTTAA GTGTTTCCTA TTGGAACATG AATCGTTTAG TCGACTTTAG TGAGCAATTT ACTGATTTAG GTGAATGGGC TGGTGTTGCA CCTTCAGAGC AAGATGTGGT GGTAAATAAC ACTACGTTTG CAACGACGCG TTATGATGCG TCAAGTAACA TTCTTTCAGT GTTAGGTAGT CAGCTGTTAC TAGGCGATGA TGTCACTATT GAGTCAACAG AAAAGTATGT TTGGATTTCT CAAAGCCTTT GGGAGAATGC TTTTGCCAGC GTTAAATCTG TCATTGGTAA ACAAGTAACA ATTACCAATA AAAATTATAT CATTGCTGGT GTTATTGAAG ACGTAATGGC GATAAAGAGT ACCCGTGCAG TTTTACCACA GCAAGTCTGG TTTATCGCCA ATTTAGCCAA AGTTAAGACG CAAACTGACT CAGTTGGTAA TATTAGCAAC GATATTGATA CCCTGATTCT TAAATCGGCT AATGGCCAAG CAAAACTACC ATCACTAGCC CAAGTAGATG CTTGGTTAGA AGATTATGTC ACTCGAAATG TCGATGGCGA GCAAGTGCAA ATGTTTTTGG ACTTCATGAA TAGTACAAAA AAAGAAGCTA AAGGCAGTAA TTATCGTAGC AACATGTTAG GTGAAACTGA AAGTCTACTC ATCGCATTAT TTACCGCCGT TATAGGGCTG TTATTAATGG CTACGCTAAA CCTACTAAAT TTATTCATCG CGCATTATCA AGGAAGAACT AAAGAATTCG CAATTCAAAT AAGCTTAGGT GCAAGCTTAA CAAAAGTGAG ATTATTGGTA TTACTTGAGA ACCTACCGAG TTTTGTTTTA GCGGCCGTAA CGGGTTTATT AGTGACTGGT TGGGCGATAA AAAGCTTACC GCTAATCGCG GGTGATAGTT TACCTATGAT AGATGCCATT GCTATAGATA GCACCACCAT ACTTGCCTCA GTAGCCATTA TATTAGCGCT AAGCGTACTA TTTAGTTCCC TCGCATTGGT TGATATTGAT AAACATGCAC TAGGCAATAA CTTAAATAGT AGTGGTAAAG GAATACAGGC ACAAAGTAAT CAATGGCTGA GCCGAGTATT AATGGTTTTA CAACTTTCAA TTGCCTCGAT ATTACTAACC GCTTCAGTAA TGATAGCGAT GCAAAGCTAT CAAGCAGTAT ACCAAGATAC CGGTTATGAC ATAGGCAATA GTTATGAAAT TGGCATGACG GTTAGCGATG AAGAATATAT TACTCAATTA AATACCTTTG ACTCCTATGG CAAAAGCGAA GCTAAACAAT TACTTGATGG TGTGTCAAAC TTGATAGAAC AACAGGTAAG CAATAGCCGA GTTATTATCC CTAACTATGG CCCTTTGTCT GATTCTTTAC GTGTAAATGC CTTTCGTGAT GAAGAATCAG GAGAGCGCGT TATTCACCAA ATAAAGACCT TAGGGGCAAA GTATTTTTCA ACCTTTAATA TCCCTATGTT AGCTGGAGCG AATGTCAGCC AAGCCCAAAT TGATAACGAT GAAGATAGAA TTGTTATCGA TGAAAATATG GCAAAATCCT TATTTTCAAA CTTAAGCTAC CAAGAGGTTA TCGGTAAAAC TATTCAAATG AGTCCCGATG GTTCAACACC ACCATCAATT GTTACCGGGG TGGTAGCTAA TACTTTAAGC CAAACCGGTA TTGCAGAGAC CTTAGGTTTA CCTTCGGTAT ATTCTCATCG AGTAAACCCA GGTTCTACCT TACAATTTAC TGTGATGTTA CCCGCAGGAA AAACCATTAC ACCAGCGATG TTAGAAAGCG AAATTAAACG TCAATTCCCA CGTTTAACGA ACTTAACCGT ACAATCATTA ATAGATATTG GGCAGAGACA AACATTAAAT CAACGTCTTA GTTTATGGAT AGTGCTTGCC ATGACGGGTT TAACGTTATT TCTTGCTGCT ATTGGTGTAG CTGGTCTAAC ACAAATGACC ACAAACCATC GAAAATATGA ACTTGCTGTG CGTATGGCAA CGGGCGCCAA ACAAGCTAAA TTGGTCAACT TTATTTTAAA AGATGCTTTG TCTATGTTAG TGGTTGGATT AGGTTTAGGT TTTATTATTT CTGTTTTTGG TTATCAACAA GTCTCACAAA GCTTAGAAAT GTTACCTGAC TTTAACTGGT TTGCAATGGC CTCATTAGAT GCCGCGTTAG TGATTATTGT TATCTTGTCG GTAATTATGC CCGCATGGCG AGTGATAAGC AGTGACCCAA TGCAGGCCTT GCGAGAAGAG TAA
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Protein sequence | MSLFKKSLYQ GITRVFSLPR LSVPLILTLG LTLGAVLSVI SISSTLLYQP LQGIENEDSL QTFDYRFKMS DTLSVSYWNM NRLVDFSEQF TDLGEWAGVA PSEQDVVVNN TTFATTRYDA SSNILSVLGS QLLLGDDVTI ESTEKYVWIS QSLWENAFAS VKSVIGKQVT ITNKNYIIAG VIEDVMAIKS TRAVLPQQVW FIANLAKVKT QTDSVGNISN DIDTLILKSA NGQAKLPSLA QVDAWLEDYV TRNVDGEQVQ MFLDFMNSTK KEAKGSNYRS NMLGETESLL IALFTAVIGL LLMATLNLLN LFIAHYQGRT KEFAIQISLG ASLTKVRLLV LLENLPSFVL AAVTGLLVTG WAIKSLPLIA GDSLPMIDAI AIDSTTILAS VAIILALSVL FSSLALVDID KHALGNNLNS SGKGIQAQSN QWLSRVLMVL QLSIASILLT ASVMIAMQSY QAVYQDTGYD IGNSYEIGMT VSDEEYITQL NTFDSYGKSE AKQLLDGVSN LIEQQVSNSR VIIPNYGPLS DSLRVNAFRD EESGERVIHQ IKTLGAKYFS TFNIPMLAGA NVSQAQIDND EDRIVIDENM AKSLFSNLSY QEVIGKTIQM SPDGSTPPSI VTGVVANTLS QTGIAETLGL PSVYSHRVNP GSTLQFTVML PAGKTITPAM LESEIKRQFP RLTNLTVQSL IDIGQRQTLN QRLSLWIVLA MTGLTLFLAA IGVAGLTQMT TNHRKYELAV RMATGAKQAK LVNFILKDAL SMLVVGLGLG FIISVFGYQQ VSQSLEMLPD FNWFAMASLD AALVIIVILS VIMPAWRVIS SDPMQALREE
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