| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4373 |
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| Symbol | |
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| ID | 3522213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4605529 |
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| End bp | 4607547 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637286814 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_271022 |
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| Protein GI | 71281741 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGAAT TTATAACACC TCGAACTTTT TTATTTTCGA CACAAACAGT GGTTTTTTCA
GTACTATTAT TTGTCTTTTA TATTTTTTAT CGCACCTTTT CGCGTAAATA TGTTAAATAT
TGGCTAATGA GTATAGGTGC ACTAAATTTT AGTTATCTGA TTAAGTCTTT TGTGCCGTAT
TCTAGTCGTA ATTTTTCAAG TGACTCTTGG CAAATATTAG CTGAATTATT ACTACAAATT
TTCCAATATT CGTTCTTGAT TTTCCTGATT TTTGGCGTTT ACATTGCAAA AAACAACAAG
GAATTGTCTA AAGAAATATT AAGCGGTGGC ATTGGTGCAA TTATAATTCT CAGTGTCATC
TCGACAATGT TTTTTGCCTT TGACCCAAGC CAAGCATTTA ACCACTTTTA TTTAACCATA
AGCCTTCCTA GTTTTATTTT TGGCTGCACT TTTCTTTCAT TAGCCTGTTA TCTTTTATTT
GACAAAAAAA GCTACTTTTC AAGTCAAGTT TTAATGTATT TCTCTGCCAT TTTTGGCTTG
CGGTACTTAA TGCATTCTTT TATTTCCATT GTTGCTTTAA CGGAGCCTTG GTTCCGTCAA
TTAGAACTAT TCCTATTATA TTTCGATGTT GCTGCACATA GTATTCTTGG CTTTACCTTG
CTTATTTGGA TGCAAGGAGC TGAAAGGTTT GCCACGTTGA GTGCGATAAG TAGAGCGCAG
TACCTAGGTA AACATGACTC TTTGACCGGG GCACTGAACC GTGAACAAGT GATGGCTAAA
TTGTCAGATA AAATGCAAGA GCTGACACAC GCCAATAAAA TAAACAAGAA TCAGATGAAG
TTGGCAGTTT TTTTAATTGA TATAAAACAG TTTAAATTTA TAAATGATAC TTATGGTTTA
AAAGTTGGGG ATTTTATACT GGGAGAAATT GCCAGCCGTC TGAATCATAG TGTATTTATA
CCACAAGCTG TTGGTCGCTT AAGTGGTGAC TCTTTTATGT TTGTCATTGA ATTTGAACAA
ATATCACATG TTGATCGAGC GGTAAATCAT ATTCATGAAC TCATTGAACG TTGTTTTCGC
TATGAGCAAC AAGAAATAAC AATTCAAGGT AGCGTAGGTT ATTGTTTCTA TCCCGATGAT
GCGGATAAGT CTGAAGATTT ACTACAAAAA TCCAACCTTG CCCTACATCA CGCCGAAACC
AATAATATTC CTTCTGTTGC TTTTGAAGAG GGGATGCAGG CACAGGGCCG GCATTTAGTC
TTGATGGAGA AACAGCTACG ATCTGCCATA GCTAATGATG AGTTTGTTTT ATATTACCAG
CCACAATTAA ACTTATTTAC CAATAAACTC GAAGGGGTAG AAGCCTTAGT ACGTTGGCAG
CATCCTGAAA AGGGCTTACT CTCCCCTGGT GACTTTTTAA CAGAACTCGA AACGTTAGGC
ATGCATAATG AGTTTGATAA TTATATTTTA GTCAAAGCTT GTCAAGCAAG TGAGCGTTGG
TTCAAGTTAT ATCAACGACG TGTCGCTATT GCTGTGAATA TAACGGCAGT CGAATTTCAG
AATGAACAAC TGGTTACTAA TATTCAAATG TTATTGCATA AATACGGTAT ACCCTCTAAA
TATATTGAAT TAGAGATTAC TGAAAATGTA GTGATGACTG ATATTACCAG AGCAATGGAT
AGCATAGTGA AACTACAAAG CATGGGGATT AAAGTCTCCA TTGATGATTT TGGTACAGGT
TATTCATCTT TAGCGTATTT GCGAGACCTG CCAATAGATA AAATAAAGAT CGACCGTAGT
TTTATTAATG AAGTTGCTAT CAATGATTCT GACCTCACTA TTGTTAAGTC TATGGTTGAC
CTTTCACATG GCTTGGGTAA AAGGGTTTTA GCTGAAGGTG TTGAAACTAT CGAACAACTC
AATCTGCTTC GTCATTTAGG TTGTGATGCA GTGCAAGGTT ATTTTATTAG CAAACCACTA
CCTGAGAGTA AGTTAGTACG ATACCTTAAG AAAAAATAA
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| Protein sequence | MIEFITPRTF LFSTQTVVFS VLLFVFYIFY RTFSRKYVKY WLMSIGALNF SYLIKSFVPY
SSRNFSSDSW QILAELLLQI FQYSFLIFLI FGVYIAKNNK ELSKEILSGG IGAIIILSVI
STMFFAFDPS QAFNHFYLTI SLPSFIFGCT FLSLACYLLF DKKSYFSSQV LMYFSAIFGL
RYLMHSFISI VALTEPWFRQ LELFLLYFDV AAHSILGFTL LIWMQGAERF ATLSAISRAQ
YLGKHDSLTG ALNREQVMAK LSDKMQELTH ANKINKNQMK LAVFLIDIKQ FKFINDTYGL
KVGDFILGEI ASRLNHSVFI PQAVGRLSGD SFMFVIEFEQ ISHVDRAVNH IHELIERCFR
YEQQEITIQG SVGYCFYPDD ADKSEDLLQK SNLALHHAET NNIPSVAFEE GMQAQGRHLV
LMEKQLRSAI ANDEFVLYYQ PQLNLFTNKL EGVEALVRWQ HPEKGLLSPG DFLTELETLG
MHNEFDNYIL VKACQASERW FKLYQRRVAI AVNITAVEFQ NEQLVTNIQM LLHKYGIPSK
YIELEITENV VMTDITRAMD SIVKLQSMGI KVSIDDFGTG YSSLAYLRDL PIDKIKIDRS
FINEVAINDS DLTIVKSMVD LSHGLGKRVL AEGVETIEQL NLLRHLGCDA VQGYFISKPL
PESKLVRYLK KK
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