Gene CPS_4334 details

Gene Information

• Locus tag: CPS_4334
• Symbol: rpoD
• ID: 3522880
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4566708
• End bp: 4568558
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637286775
• Product: RNA polymerase sigma-70 factor
• Protein accession: YP_270983
• Protein GI: 71282406
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCAG CCCCTCAATC TAGACTTAAA GACCTGATAA CCAAAGGTAA AGAACAAGGT 
TATCTAACGT TTGCGCAGGT TAACGATCAT CTTCCACAAG ACATAATCGA CTCTGATCAA 
GTTGAAGATA TCGTTAGTAT GATTAACGAT ATGGGTATTC AAGTATTTGA AAATGCGCCG 
GATCAAGATA CCTTGATGAT GGCTGAAGCA AATACAGATG AAGATGCAGC CGAAGCAGCA 
GCACAAGCAC TTGCGACTGT AGAAAGTGAA ATTGGTCGCA CAACAGATCC TGTACGTATG 
TATATGCGTG AAATGGGTAC TGTTGAACTT CTAACGCGTA AAGGCGAAAT CGTCATTGCT 
AAGCGTATAG AAGAAGGTAT TAAAGAAGTT CAGCGTAGTG TTTCTGAATA CCCACCAGCA 
ATAAACTATT TATTAGATAT GTGGGATAAC TTTGAAGCGG AAGAAGTCCG CTTAACTGAT 
ATTATAATCG GCTTTTTAGA CCCAGATGCT GAAGATGACG ATGTTGCCGC TGCAGCGACG 
CATGTTGGTA GTGAATTATC GAAAGAAGAT CTCGCCAATG AAGATAGCGA AAAGAAAGAA 
GGCGACGCTG AAGAAGAAGA TGAAGAAGAA GAAGATACTG GACCAGATCC AGAGCTAGCG 
CGTGAAAAAT TCACTTTGCT ACGCGAAGCA CATGAGAATG CTACCAAAGT AGTCAAGAAG 
AAAGGCCGCG GCCATAAAGA CGCTCAAGAA GCTATTGATG CGGTTGCCGA AGTTTTTAAA 
GAATTCCGTT TAATTCCTAA ATTATTTGAT AAGTTAGTTA AAAACATGCG TGGCATGATG 
GACAGACTAC GTGTTCAAGA ACGTTTGATC ATGAAGCACT GTGTTAGTGC TGGTATGCCT 
AAGACTACAT TTATCAAAAT ATTCCCGGGT AATGAAACCT CAAAAGAATG GTTTGAAGCA 
GAAAAAGCTG CAGGTAACCC GTATTCAACT AAGCTTGGTG ATATTGAGCA TGATGTTGAA 
CGTTGTATCT ACAAACTTAA CCAAATTGAA GAAGAAACCC ACCTAAATAT TCACGGCATT 
AAAGATATTA ACCGTCGTAT GTCTATTGGT GAAGCGAAAG CACGTCGTGC AAAGAAGGAG 
ATGGTTGAGG CAAACTTACG TTTAGTTATC TCAATTGCGA AGAAGTACAC CAACCGTGGC 
TTACAGTTCC TTGATTTAAT CCAAGAAGGT AACATTGGCT TAATGAAGGC CGTTGATAAA 
TTTGAATACC GTCGTGGTTA CAAATTCTCA ACTTATGCAA CATGGTGGAT CCGTCAAGCA 
ATCACTCGTT CTATTGCTGA TCAGGCGCGT ACCATTCGTA TTCCTGTGCA CATGATTGAA 
ACCATTAATA AGCTAAACCG TGTTTCTCGT CAAATGTTAC AAGAAATGGG ACGTGAACCT 
ACGCCAGAAG AATTAGCTGA ACGTATGGTA ATGCCTGAAG ATAAAATTCG TAAAGTATTG 
AAAATAGCTA AAGAGCCAAT TTCAATGGAA ACGCCAATCG GTGATGATGA AGATTCACAT 
CTTGGTGACT TTATTGAAGA TGGTAGTGGT GAGCTTCCTG TTGATTCAGC GACTTCAGAA 
AACCTTAAAG GTGCAACTCA TGAAGTACTT GCTGGTTTAA CTGCTCGTGA AGCGAAAGTA 
CTTAGAATGC GCTTTGGCAT CGATATGAAT ACTGACCATA CTTTGGAAGA GGTTGGTAAG 
CAATTTGATG TTACTCGTGA ACGTATTCGT CAAATTGAAG CGAAAGCTTT ACGTAAATTA 
CGTCATCCAT CTCGTTCAGA GCAGCTTAAA AGCTTCTTAG ATGGTGAATA A 

 

Protein sequence

MEPAPQSRLK DLITKGKEQG YLTFAQVNDH LPQDIIDSDQ VEDIVSMIND MGIQVFENAP 
DQDTLMMAEA NTDEDAAEAA AQALATVESE IGRTTDPVRM YMREMGTVEL LTRKGEIVIA 
KRIEEGIKEV QRSVSEYPPA INYLLDMWDN FEAEEVRLTD IIIGFLDPDA EDDDVAAAAT 
HVGSELSKED LANEDSEKKE GDAEEEDEEE EDTGPDPELA REKFTLLREA HENATKVVKK 
KGRGHKDAQE AIDAVAEVFK EFRLIPKLFD KLVKNMRGMM DRLRVQERLI MKHCVSAGMP 
KTTFIKIFPG NETSKEWFEA EKAAGNPYST KLGDIEHDVE RCIYKLNQIE EETHLNIHGI 
KDINRRMSIG EAKARRAKKE MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK 
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLNRVSR QMLQEMGREP 
TPEELAERMV MPEDKIRKVL KIAKEPISME TPIGDDEDSH LGDFIEDGSG ELPVDSATSE 
NLKGATHEVL AGLTAREAKV LRMRFGIDMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL 
RHPSRSEQLK SFLDGE