| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4254 |
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| Symbol | |
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| ID | 3523269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4482947 |
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| End bp | 4484521 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637286695 |
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| Product | lysM domain-containing protein |
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| Protein accession | YP_270904 |
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| Protein GI | 71278988 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.305557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAAT ATTTAATTTC AACCCTTTTG ACAGCAATCT CTATGACGTT GTTAAGTGGT
TGTGTTACCC AAAGCTTTGA AAATAATGAG CCTATCGTAA AAAACCAAGC AAATCGTGAT
GAAATGGCGG CGACGCGTAT TTCCTTAGGA TTAGGTTATT TAAAAATGGG TGATATGTCT
CAAGCAAAAC TTAATCTTGA GAAAGCAAAA AAATTCTCAC CGAATTTAGT CCAAGTACAT
ACAGCATTTG CCCATTATTA TGAAACAGTA GGCGAAGGAA CGCTCGCTAT TGAGTCATTT
GAACAAGCCC TATCCATTAA AGCTGACAGT GCCGATACCT TGAATAATTA CGGGGTATTC
TTGTGTCGAC AAGGTAACGT TGCTGCAGCA GAAGTACAAT TTCTCAAAGC GATTGCGGTA
CCTAGTTATT TATTAGTATC GGAAAGTTAT GAAAACCTTG CCTCTTGTTA TTTACAAAAT
GACAATTTTG AAAAAGCAGA AATGTACTTA AATAAGTCTA TTTACCATAG TCCAAACAGA
ACAAGTACGT TATTTCAAAT GGTACGTCTG CAATATGCCA TGGGCAATTA CAAAGAAGCT
AAGCGTTACT TACAAAAATT TGAGCGAAGT ACACAACGTT TTACTGCCAA TTCATTATCA
CTTGCGTATA AATTGTATTG GAAACTAGGC CAACGCAGAA CTGCAAGAAA TTACGCGAAT
ATGTTAGTGA AAATGTATCC ACAATCATGG GAGGGTAAAC AATACCTACT TAATGAGTTG
GAGCTGATCG ACGCTGATAA TTTGGCAAAG AAGTACCAAC TAACGCAAAA AGAAAAGAAT
CGCACATTAT CACCCTCTAA TAATAAGCGT GTGGTAAAAC TTTCGCCGAG AAAATCAGCG
AACACACCTT ATACCAGTAG TATTAAAACA GTTACCCCGA CAATGAGTAC TGCTAATGCG
ACAAATAATG CGGCAACTAC TGCGGTTAAA ACGAAAGCAG TGTCTACGCC ATTGATAACA
AGTACCACGC CAACCGCCGT TGTTTCAGGG GCTGCTTTAC TTTCAACTAA AGTAGCAAGT
ACAGTTGCAG TGACAAATAA GCCAACAAGT GACATCGCAG TAACAGATAA GCCAGCAAGT
GATATGGCAG TAACAAAAGT AGAAGACGTG GTGCCGCTTA ATGAAGCAGT AGATAAAGTA
ATTCCTTTGG CAACAGAAGC TGTTGTAGTT AATCAAGTGG TTTCAAATTC GATTGAACCG
ACTTCAACTA TGCCTATAGC TGCGACACGT GATGTACCTT TACCAGAAGC CTTACCTGAA
GAAGTAGAAA CTGAAGTCGT GGTAGCTGAA GTCATAGCGG TTGCAGCAGT AAGTAATGAG
TTTGAACTGG TTGATACGCA AGAAATAGTA CATACAGTAG TACCAGGTGA GAATTTGTAT
AGTATTTCTG TGGAATATAA TGTCAAACTC AATACATTAC GTAAGTGGAA TGATATCTCC
GAAAAAAATA AAATCCGCAT AGGCGATAAG CTCTATGTGG TTGATCCTCA AACAGTGAAA
AATATTAATG ACTAA
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| Protein sequence | MAKYLISTLL TAISMTLLSG CVTQSFENNE PIVKNQANRD EMAATRISLG LGYLKMGDMS
QAKLNLEKAK KFSPNLVQVH TAFAHYYETV GEGTLAIESF EQALSIKADS ADTLNNYGVF
LCRQGNVAAA EVQFLKAIAV PSYLLVSESY ENLASCYLQN DNFEKAEMYL NKSIYHSPNR
TSTLFQMVRL QYAMGNYKEA KRYLQKFERS TQRFTANSLS LAYKLYWKLG QRRTARNYAN
MLVKMYPQSW EGKQYLLNEL ELIDADNLAK KYQLTQKEKN RTLSPSNNKR VVKLSPRKSA
NTPYTSSIKT VTPTMSTANA TNNAATTAVK TKAVSTPLIT STTPTAVVSG AALLSTKVAS
TVAVTNKPTS DIAVTDKPAS DMAVTKVEDV VPLNEAVDKV IPLATEAVVV NQVVSNSIEP
TSTMPIAATR DVPLPEALPE EVETEVVVAE VIAVAAVSNE FELVDTQEIV HTVVPGENLY
SISVEYNVKL NTLRKWNDIS EKNKIRIGDK LYVVDPQTVK NIND
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