| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4245 |
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| Symbol | |
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| ID | 3521281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4473133 |
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| End bp | 4474566 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637286686 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_270895 |
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| Protein GI | 71280812 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTTA ATTACCGAAT TGTTTTTATT ATCACTGCCT TAGTTTTTAC TTTGTCTGCC
ACCTTAACGG TAATTAACTA TTTAACTTCG ATGGAGACGA CTCGGGAGCA ACTAAAAAAT
AGTGCCCTGC CGTTAACAAT AGATAATATA TATACTGAAA TTCAGAAAAA TATCATTGAA
CCTAATCTCA TTGCCTCAAT GATGGCGCAC GATACTTTTT TAATTGACTG GCTATCACAT
GAAGAAGATG ATCAGCAGCA AATTGTACAT TACTTAGAAA CCATTCAAAA TAAATACCAG
ATGTTTACCG CCTTTCTTGT ATCAGATAAA AGCCGGAACT ACTACTCAGC CAAAGGAATG
TTGGATAAAG TTGATAAAAA AAGTCCTAAT AGTCAGTGGT ATTTAGATTT TCAAAAGACC
TCTGAACTAA GCGAAATAAA TATAGATTAC AATACCCATA TGGGCAGTGA ACTTATCATG
TTTATCAACC ATAAAATCCT TGATAGTGAT TATCATATGA TAGGCGCCAC AGGTGTAGGG
TTAAAAACAT CTTACATCAA TGATATGTTA AAAGTTTTCA GACAACGTTA TCAGTTTTCA
GTTTACTTTG TAGATGTTAA TGGCAAGGTT GTGATTGCTG AACAAAACGT GAAAAAATTG
AATAACCTGA GCGATATACC TGATCTAGCG AGGCAACTTT CAGACATTAT TGGCAAAGGA
AGTCAGGTGT TTGAATACAC AGAGGCGGGA GAAGCTTTTC TACTTAATAG AAAATATATT
AGTGAATTAG ACTTATATAT TATCGTTGAG GCCAAGGTTA ACAACTTTAC CCAAGCGGCT
GAAGAAACCT TTTATCTCAA CGTACTACTC TCAACAGTTA TCACCCTACT TATCAGCTTT
ATCATTGTGC TTTATGTTAG AAAAATTCAT TTAAAATTAG ATAAACTGGC CAGTAATGAC
GACCTAACTA ACTTACCTAA CAGACGTAGT TTTCATGATG AACTCGCAAA GCAATTATTA
CTCAAAGAAC GTTATAATAG CGAGCTGTCT CTTTTATTTA TTGATATTGA TAACTTCAAA
AAGGTTAACG ACACCAAGGG ACATGACGTT GGTGATAAAG TACTAAAGTC TTTAGCAAAT
GTTTTAAATG GTAATGTGAG AAAAAGTGAT TTTGTTGCGC GATGGGGAGG AGAGGAATTC
ATTATCCTTT TAATCGGCTC TGATATTAAT CAAGCCCAAG TTATTGCTGA GCAACTTCGT
TCACAAATTG CCAATAGTAA ACATTTATCC CAATATGCCC AACAACAAGT TACCATTAGT
TTAGGGGCAA CGTCTGTGAC TAATGAAGAT AATATCGATA CGATTTTAAA ACGTGCTGAT
TTGGCTTTAT ACAAAGCTAA ATCTAAGGGA AAAAACTGCG TTGTGTCAGA CTAG
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| Protein sequence | MRFNYRIVFI ITALVFTLSA TLTVINYLTS METTREQLKN SALPLTIDNI YTEIQKNIIE
PNLIASMMAH DTFLIDWLSH EEDDQQQIVH YLETIQNKYQ MFTAFLVSDK SRNYYSAKGM
LDKVDKKSPN SQWYLDFQKT SELSEINIDY NTHMGSELIM FINHKILDSD YHMIGATGVG
LKTSYINDML KVFRQRYQFS VYFVDVNGKV VIAEQNVKKL NNLSDIPDLA RQLSDIIGKG
SQVFEYTEAG EAFLLNRKYI SELDLYIIVE AKVNNFTQAA EETFYLNVLL STVITLLISF
IIVLYVRKIH LKLDKLASND DLTNLPNRRS FHDELAKQLL LKERYNSELS LLFIDIDNFK
KVNDTKGHDV GDKVLKSLAN VLNGNVRKSD FVARWGGEEF IILLIGSDIN QAQVIAEQLR
SQIANSKHLS QYAQQQVTIS LGATSVTNED NIDTILKRAD LALYKAKSKG KNCVVSD
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