| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4219 |
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| Symbol | nirTB |
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| ID | 3523274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4441249 |
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| End bp | 4443060 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286660 |
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| Product | denitrification system component NirT/cytochrome c552 |
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| Protein accession | YP_270869 |
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| Protein GI | 71278993 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.50309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAATA ACACTTTCTT AAAACCAAGT TTTTGGTCAC GCCGATTAAT CCTCGGCACT
ACTGTCTCAG GCGCTGTTAT CTTCTTTATC GTAGGTATTG TCTTCTGGGG TGGTTTCAAT
ACTGCCATGG AAGCAACGAA TACCACCGAG TTTTGTATCG GTTGTCACGA AATGGAAGCC
AACGTTTACC AAGAATATAA ACCATCAATA CATTTTTCTA ACCGTACCGG CGTAAGAGCT
GGCTGTCCTG ACTGTCACGT TCCTAAACCT TGGATACATA AAGTCGTTCG TAAAATTCAA
GCGTCAAAAG AAGTTTTTTC TTGGTTAACA GGCAAGCTTG ATACCAAAGA AAAATTTAAT
GAGCACAGAT TTGAATTAGC GCAAAGTGTT TGGCATGCCA TGAAATCAAC TGACTCGAGA
GAGTGTCGTA ACTGTCACAA TTTTGAATCT ATGAATCCTG AATTCCAAAA GCCACGTGCA
CGTAAACAAC ATTTAAATGC TTTTGAAACA GGACAAACCT GTATCGATTG CCATAAAGGT
ATTGCGCATC ATAACGTACG TGACAAGCTT TCTGATGAAG AATTAGAAAA GCTAGAAGCG
CCAAATCCAG ACTATATTCG TGAAGTACCA CAAGCTTATC GCGAAGGTTT AGCACGTGTA
GAAGCGAAAG AAGCTGCAGC TGCTGCGAAA GTCAAAGAAG AAAAAATGGC TGAAAAAGCA
AAAACTGAAC AGAAAATAGC CTCTGCTGTT GAAGAAGCAT TAGCTAATGC TGGTTCTAGC
AAAGCGACTA CAAGTAAATC ATCGAAAGGG TCTGTAAGTG CTGCACCTAG TGCAAGTAAT
ATTAATGTTG ATTGGGGCAA AGCAAGCTCG AAAGATATTG GTGTTTTCTA TCCTGGTACA
GCGTCTATTG AATGGATCCT AGGTCGTAAG CATGGTGGTA AACGTGCCTT TACTAAAGGC
GACCGTTGTA TTGAATGTCA TGGTGAAGAG ATTGCGGATA TTGGTAACAA TATCGTTACT
GGTGAAAGTG AGAAGAAACT AGAACCTAAT GTTATCCCTG GAAAACGTGG CCATATCGAT
GTAACGATTG ATTCAACGTA CGATGCTGAA AATCTATATT TGAGATTTAG TTGGGCTGAT
GGTGAACATG CAGCTGTTCC ATTTGTTGAT GGCGGTAAAA TGGACCCAGA AAACCCAATG
AAATTAGCCT TTATGCTAGC AACTGATGAT GTTGAATACG CAGATAGAGC AGGCTGTTGG
GGTACGTGTC ATGCCGATGC TAACTCTATG CCGTTTGCAC CAGATGCTGA TACATTGAAA
GGTAGTGATT TAGCTAAGCG TCTTAAGTTC GATACGGGTT CAGGTACAGG TGTTACTAAG
TATCTTAAAG AATCGCGTAC TAAGTTAGAG CTTAAAGGAC GTGGCGGTAA AGCGCTAGGT
GGTTGGGATA AACTTAAAGA TCAAAGCGAC ATTGATGCGG CACAAAAGTC TAATCAATTT
ATGGATGTTA TTCGCTATAA ATCAGGCACC AAAGAAGTAG AAGATGGTCA GATTTTAGCA
GAACGCGACA TGCATAAAGG CGTTGGCGCA GCTGTTGAAG CTTCACTTAA AAATGGTACT
TGGTCGGTAG TTGTTAAGCG TAAGCTTAAA TCTGACAAAG CGGGTGATGT GAGTATTGAA
ACAGGTAAAG TATATAACTT TGGCTTTGCA ATACATGACG ATTATTCAAG CGCACGTTAT
CACCATGTTT CATTTGGTTA TAAACTAGCA CTTGATAATG CTGATGCAGA ACTTAATGCT
ACTAAGCAGT AA
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| Protein sequence | MANNTFLKPS FWSRRLILGT TVSGAVIFFI VGIVFWGGFN TAMEATNTTE FCIGCHEMEA
NVYQEYKPSI HFSNRTGVRA GCPDCHVPKP WIHKVVRKIQ ASKEVFSWLT GKLDTKEKFN
EHRFELAQSV WHAMKSTDSR ECRNCHNFES MNPEFQKPRA RKQHLNAFET GQTCIDCHKG
IAHHNVRDKL SDEELEKLEA PNPDYIREVP QAYREGLARV EAKEAAAAAK VKEEKMAEKA
KTEQKIASAV EEALANAGSS KATTSKSSKG SVSAAPSASN INVDWGKASS KDIGVFYPGT
ASIEWILGRK HGGKRAFTKG DRCIECHGEE IADIGNNIVT GESEKKLEPN VIPGKRGHID
VTIDSTYDAE NLYLRFSWAD GEHAAVPFVD GGKMDPENPM KLAFMLATDD VEYADRAGCW
GTCHADANSM PFAPDADTLK GSDLAKRLKF DTGSGTGVTK YLKESRTKLE LKGRGGKALG
GWDKLKDQSD IDAAQKSNQF MDVIRYKSGT KEVEDGQILA ERDMHKGVGA AVEASLKNGT
WSVVVKRKLK SDKAGDVSIE TGKVYNFGFA IHDDYSSARY HHVSFGYKLA LDNADAELNA
TKQ
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