| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4166 |
|---|
| Symbol | |
|---|
| ID | 3522071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4380332 |
|---|
| End bp | 4381858 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637286609 |
|---|
| Product | response regulator |
|---|
| Protein accession | YP_270818 |
|---|
| Protein GI | 71281599 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGTA ATTTTAGTGA TATTAATGCC TTAGTTATCG ATAACAACAG CAGTATGAGA
CAAATCATGG TCTCAATGTT GCGCGTTATG GGCATGAAGA CTGTGATAGT TGCCAATAGT
GAAAGTCAAT GTATGCAGCT AATTACTGCA GAAAACATCA ATTTAGTGGT CTGTGGTTGG
AACTTACCAA AACTGAACGC TCTTTCAGTA TTAAAAAAGT TACGTGACAA TGAAAACACC
ATGAAAACTC CCTTTGTGAT TGTCTCTACC ATGATCGAGC AAGACCTTAT TAAACAAGCG
ATTGCAATGG GTGTGTCAGA GTATTTAGTT CCCCCATTTA ATAAAAAAAT ATTTGAAAAA
CGTATAAATA AAGCACTCAA AATGCCAATA CAGGCAAGTG CAACAAGCCT ATCCCGTACT
ATCAATAGCA AGCGATTTAG TCAAAAAGTC CATTGTGGTG AATTAAATGT ATTAGTTGTT
GATGATATTG CCGATAACAT TGCAATTATC AAAGAACTCA TTAAAGACAA ATATAGAGTC
AAAGCTGCGT TAAATGCTAA GACAGCAATG AAGATTTGCT TGTCTGATTT ACCACCCGAT
TTAATACTAC TCGACATTAT GATGCCAGAA GTTGACGGGT TAACTTTGTG TAAGCAACTT
AAGGAAAACC CGTTAACACA AAATATTGTC GTTATCTTTT TAACCGCACT TTCTGAAACA
GAGGATGTTG TTAAGGGGCT TTCTCTTGGT GCGGTCGATT ATATTACTAA ACCTATTGTT
CCAGCAATAT TGTTAGCCCG CATAGAAGTG CACAGTAAAA TCATTTTGAA TCAACGCACC
ATACAAGGTC AAATAGATGA TTTTTTGCAG AAAAATGAGA TATTCGTTCA GTATAATGAC
AACACATACA ATAAGTTAAC TAGGCTATTG CATGATAGTG CTGAAACATT AATTGAACTG
TCTCCCACTG TTAATACAAA ACCTTCCAGA CGTTCTTTAT CACAATTAAA ATACAATATT
GGCATGAGTA CCTTGTTACT TGATAGCGGC CATGTTTTAG CAAAATTACA ACAGAATAAT
TACACACTAA CTCTTACTAA AGAAAAACTT GGAAATCTCT TATTCCCAAT TTTGAGTATT
TTTGATTTCA TTATTGCTAG CAAAAATATA GAGGCCTTCG ACAATATTGA TGAGAGTATC
AATATCAATT GCGATAAAAA ACTACTGGGT ATTATCTTTG CTTGTCTTTA CCTCAATGCC
TTAGATGTCG CACCTAGGGG CTCTAAAGTG TCAATTACTT CAGCAAGCTA TCAAGACTTC
GTACTCATCA AAATACACAA TATTACAGAA ATACCCGAAG AAGCCTTAGA TAAGATTGCG
CACTTATCGC ATTCAAATAA AACGAATGAG GTTAATGATA TGAGTATCAA TCTAGCTTTC
TTAGTCATGA ACATACTACA AGGTGAACTG TATTTTCATA GCAGTAAGGA GTTTGGGACC
ACTTTCTACC TAAAGTTACC TTGCTAA
|
|---|
| Protein sequence | MPSNFSDINA LVIDNNSSMR QIMVSMLRVM GMKTVIVANS ESQCMQLITA ENINLVVCGW
NLPKLNALSV LKKLRDNENT MKTPFVIVST MIEQDLIKQA IAMGVSEYLV PPFNKKIFEK
RINKALKMPI QASATSLSRT INSKRFSQKV HCGELNVLVV DDIADNIAII KELIKDKYRV
KAALNAKTAM KICLSDLPPD LILLDIMMPE VDGLTLCKQL KENPLTQNIV VIFLTALSET
EDVVKGLSLG AVDYITKPIV PAILLARIEV HSKIILNQRT IQGQIDDFLQ KNEIFVQYND
NTYNKLTRLL HDSAETLIEL SPTVNTKPSR RSLSQLKYNI GMSTLLLDSG HVLAKLQQNN
YTLTLTKEKL GNLLFPILSI FDFIIASKNI EAFDNIDESI NINCDKKLLG IIFACLYLNA
LDVAPRGSKV SITSASYQDF VLIKIHNITE IPEEALDKIA HLSHSNKTNE VNDMSINLAF
LVMNILQGEL YFHSSKEFGT TFYLKLPC
|
|---|
| |