Gene CPS_4129 details

Gene Information

• Locus tag: CPS_4129
• Symbol: rpoE
• ID: 3522292
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4344131
• End bp: 4344757
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637286572
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_270784
• Protein GI: 71281820
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.131676
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTACAA ATCAATTGTC AGTGTTAAAG GATACGGCTC AAAAGAGCGA ACCAAATATA 
GATCAACAGT TAGTTGAGCG GGTTCAGCGT GGCGATAAAA ATGCGTTTAA TCTGTTGGTT 
ACTAAATATC AGCATAAAGT TGCAAATTTA GTCAGTCGTT ATGTTAAAAA TCATAGCGAT 
GTACCTGATA TTGTCCAAGA AGCCTTTATT AAGGCATATC GAGCATTACC TAACTTTAGA 
GGCGATAGTG CTTTTTATAC TTGGCTATAT CGTATTGCTG TTAACTGTGC CAAAAATCAC 
AGTGTAGCAT TAGGTCGTAA GCCACCAAGT AATGATGTCG AAATTAGTGA TGCTGAACTT 
TATGATACTG GTGATGCGCT AAGAGAAAAT GCTTCACCAG AAAAAATATT ACTAACAGCT 
GAAATTAAAA AAGTAATTTT TAGCACCATG GAGTCACTCC CTGATGATCT GCGCTTAGCA 
ATTAACTTTC GAGAAATTGA GGGTTTAAGC TACGAAGAAA TTGCGACGAT AATGGAGTGT 
CCCGTAGGCA CAGTGCGCTC ACGTATTTTT AGAGCACGTG ATGCTATCGA CAAGAAGATT 
AGACCCTTGT TGCAGAAAAA TAATTAA 

 

Protein sequence

MSTNQLSVLK DTAQKSEPNI DQQLVERVQR GDKNAFNLLV TKYQHKVANL VSRYVKNHSD 
VPDIVQEAFI KAYRALPNFR GDSAFYTWLY RIAVNCAKNH SVALGRKPPS NDVEISDAEL 
YDTGDALREN ASPEKILLTA EIKKVIFSTM ESLPDDLRLA INFREIEGLS YEEIATIMEC 
PVGTVRSRIF RARDAIDKKI RPLLQKNN