| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4079 |
|---|
| Symbol | |
|---|
| ID | 3520411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4289880 |
|---|
| End bp | 4292759 |
|---|
| Gene Length | 2880 bp |
|---|
| Protein Length | 959 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286522 |
|---|
| Product | M16 family metallopeptidase |
|---|
| Protein accession | YP_270734 |
|---|
| Protein GI | 71279948 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.621113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGACAAT CTCCTCAAAT CCGCTTTCCG GCACAAATAA TCAATAAATT TAGAATCACG
GCAATAGCTG CTAGTACAGC ATTATTATTT GCCTGTAGTA GCCAAGAAAC TATAACCTTA
CCCACAGGCG TGAGTTTGGT TGAAACGGTT ACCGCTCAGC AAGATACTCT GAATATTCCT
TTTAAAAAGT ATAAATTAGC TAATGGCTTA ACAGTTATTT TGCATCAAGA TAATTCAGAT
CCCTTGGTGC ATGTTGATGT TACCTATCAT GTTGGCTCCG CTCGTGAACA ATTAGGGAAG
TCTGGTTTTG CGCACTTCTT TGAACATATG ATGTTTCAAG GCTCACAAAA TGTGGCTGAT
GAACAACACT TTAAAGTCGT GACACAAAGT GGTGGTGACC TCAATGGCAC CACTAACTCA
GATCGCACTA ACTACTTTGA AACAGTACCG AAAAACCAGT TAGAAAAAAT GTTATGGCTT
GAGTCTGACC GCATGGGTTT TTTACTCGAA GCTATCACTC CAGAAAAGTT TGAAATACAA
CGTGCGACGG TAAAAAATGA GCGTGGGCAG AATGTTGATA ATCGCCCTTA TGGCCGATTA
AATGAAACTG TTAATCAAAT GATTTTCCCA CGTGAACATC CATATTCATG GCCAGTTATT
GGCTACATGT CAGATCTAGA CCGTGGTACG GTAACTGATT TAAAAGAGTT CTTCTCTCGT
TGGTACGGTC CAAATAATGC GGTAATCACT ATTGGTGGTG ATATCGATGA AGCGCAAACG
CTGGCTTGGG TAAATAAGTA TTTTGGTAGT TTAAATGCGG GACCTGCGGT AAATAATATC
GCTAAATCGT CAGTGACATT AAGCGAGAAC CGTTATTATT CATTTAGCGA CAATGTATCT
TTACCTTTAC TTTACATTAG CTTCCCTACT GTTTATGGCA TGCACGAAGA TGAGCCAGCT
TTAGATGTAC TTGCTAATAT TTTAGGTAGT GGTCCAACTT CATTACTTTA TAAAAATCTC
GTTAAATCAG GTATTGCTGT GCAAGCTGGT GCAAGCCATC CTTGTCGTGA ACTTGCTTGT
CAAATGAGCT TCTATGCGCT GCCAAACCCA CAGCAAGGTT TATCATTAGC AAAAATTGAA
CAAGTGATTA ATGATACTTT AGTTGAGTTT GAAGAGCGCG GTGTTAATGC CGATGATTTA
TTGAAGACTA AAGTCGGTAT CGAAACGGGT ACTATATATG GACTGCAAAG TGTCTCAGGC
AAGGTCTCTA ATTTAGCGCA TTATCAAACC ATGTTAGGGG ATGCAAATTA TACGGAGCAA
CAAGTTGCTC GTTATAATAA AGTGACCAAA GTTGACGTTA TGCGTGTATT CAAAAAATAT
ATTCAAGGTA AAGGCGCAGC AATATTATCG ATAGTTCCTG AAGGTCAAGA AGCGTTAGTT
GCCAAAGCAA ATGATTTTGT TTTACCGGAC GTAAGTAATC CTGCGAAACT AGCACAACTT
GATACGCCTA TTATGAAGAA TGCTAGTGAT TTTGATCGCA GCGTGATGCC GAGCTCTCCT
GCTAATCCAC AAATTACAGT ACCAACTCTA TGGCGTGAAA CTTTTGAAAA TGGCATTGAA
ATTATTGCGA CTAAAAATAG TGAAACACCG ACTATTAGTT TGCTACTAAG TCTTGATGGT
GGTGTATTGC TTGATTCTGT GGAAAAAGCG GGTTTAGCAA GTTTAACAGC GAGTTTGATG
AATGAAGGCA CCACTGTTCA CAGCAAAGAA GAGTTATCGA ATGAATTAGC TAAACTGGGC
AGTAATATTT CTATTGGTGC AGCAGGGCGA AATACTTACA TTAAAGTTAA TAGCTTAGTT
AAAAACTTCG ATGCTACCTT AGCGTTAATG AACGAGATGA TGTTTAAACC TGAATTTGCA
CAAGATGATT TTAATCGTGT TAAAAATCAA CTGATTCAAG GATTAGAGCA AGGTAATAAA
GATGCTCGAT CGTTAGCTAA CAATGCTTTA AAGCAAGTGA CTTACGGCAA AGATAATCGT
TTTGGTTTAG CTGATAGCGG TACTATTGCT ACTGTATCTG CGATAACGCT AGATGATATT
AAAGGTTTTT ATCAAACATA CTTTTCGCCA GCTAAAGCAA GTTTAGTGGT GGTTGGAGAC
ATCGATAAAG CTGAATTATT AATAAAACTT GCTTCATTAA GCACTTGGCA AGGTAAAGAT
TATACGATTA GTGGCGATTA TAACTTCCCT GAGGTAACAC CTAACAAGCT GTATTTTGTT
GATTTACCTA ATGCCAGCCA ATCGGTGATA AAGCTATCAC GTAGAGCGAT GACTTATGAT
GCAACGGGTG AACACTTTAA AGCGACGTTA ATGAATTACC CACTAGGTAG TGCGTTCAAT
AGCCGTATTA ATTTGAATTT ACGTGAAGAT AAAGGTTATA CCTATGGCGC ATCAAGCTAC
TTTTCTGCGG GTAAAACTTT AGGTCGTTTT AGTGCAGGTG CCAGTGTTAA AAAAGAGCAT
ACTTATGATG CTATGGTTGA AATTGAACAG GAATTGAAAA ATTACCAACA ACATGGCTTA
ACAGAAAGTG AAGTTACTTT TATGCGCCAA GCCATTTCGC AAAATGAAGC ATTAAGCTTT
GAAACGCCGG GCCAAAAAAG TGGTTTCTTA AGACAATTGT TACAGTTCAA TCTGCCTGTT
AATTATGGTG AAGAACAAAG CAGTATAATT AACAGCATAA GTATTGAGCA GTTAAACGCT
ATAGCGGCAC AAGAATTATC AAAACCTATG CAATGGATTG TTGTAGGAGA CGGTCAAGTA
GTTAGGCCAC AACTTCAAAA GCTTGATATC GAAGTAGTTG ATCTTGAACT AGCTAAATAA
|
|---|
| Protein sequence | MRQSPQIRFP AQIINKFRIT AIAASTALLF ACSSQETITL PTGVSLVETV TAQQDTLNIP
FKKYKLANGL TVILHQDNSD PLVHVDVTYH VGSAREQLGK SGFAHFFEHM MFQGSQNVAD
EQHFKVVTQS GGDLNGTTNS DRTNYFETVP KNQLEKMLWL ESDRMGFLLE AITPEKFEIQ
RATVKNERGQ NVDNRPYGRL NETVNQMIFP REHPYSWPVI GYMSDLDRGT VTDLKEFFSR
WYGPNNAVIT IGGDIDEAQT LAWVNKYFGS LNAGPAVNNI AKSSVTLSEN RYYSFSDNVS
LPLLYISFPT VYGMHEDEPA LDVLANILGS GPTSLLYKNL VKSGIAVQAG ASHPCRELAC
QMSFYALPNP QQGLSLAKIE QVINDTLVEF EERGVNADDL LKTKVGIETG TIYGLQSVSG
KVSNLAHYQT MLGDANYTEQ QVARYNKVTK VDVMRVFKKY IQGKGAAILS IVPEGQEALV
AKANDFVLPD VSNPAKLAQL DTPIMKNASD FDRSVMPSSP ANPQITVPTL WRETFENGIE
IIATKNSETP TISLLLSLDG GVLLDSVEKA GLASLTASLM NEGTTVHSKE ELSNELAKLG
SNISIGAAGR NTYIKVNSLV KNFDATLALM NEMMFKPEFA QDDFNRVKNQ LIQGLEQGNK
DARSLANNAL KQVTYGKDNR FGLADSGTIA TVSAITLDDI KGFYQTYFSP AKASLVVVGD
IDKAELLIKL ASLSTWQGKD YTISGDYNFP EVTPNKLYFV DLPNASQSVI KLSRRAMTYD
ATGEHFKATL MNYPLGSAFN SRINLNLRED KGYTYGASSY FSAGKTLGRF SAGASVKKEH
TYDAMVEIEQ ELKNYQQHGL TESEVTFMRQ AISQNEALSF ETPGQKSGFL RQLLQFNLPV
NYGEEQSSII NSISIEQLNA IAAQELSKPM QWIVVGDGQV VRPQLQKLDI EVVDLELAK
|
|---|
| |