Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3968 |
Symbol | |
ID | 3522160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4157523 |
End bp | 4159895 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637286414 |
Product | penicillin-binding protein |
Protein accession | YP_270626 |
Protein GI | 71281688 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.337015 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAAAC AAGGGTTAAC AACCATTATT CGTTGGTGTA AACATCAACG AATAGTGGTC TTTTTGGCGT TAGCCTTGTT TATGTCACTC GCTGTGTTAT TTACGCTTGA TAGTCTTTAC CCATTAAACT TACCTGAGAA AAATAACTTA TTTGCCCGTG TTGTGGTGGA TGAAAATGAT CGACCATTAC GAAGCTTTGC TGATAAAAAT GGTATTTGGC GTTACCCGAT AAAATTGCAT CAAGTCTCCC CACTCTATAT CGACGCATTA ATTAATTATG AAGATCGCTG GTTCTGGCAT CACCCGGGCA TAAATCCGTT TTCATTGCTC AGAGCGACAA TGCAAAATGT CGCGAGTAAT AAAATTGTTT CTGGTGGCTC AACACTCTCA ATGCAAGTGG CGAGGATTTT ACATCCGCAC AAGCGAAGTT TATGGGGAAA AACCAAGCAA GTATTAAGAA CATTACAACT AGAGTGGCAG TTAGATAAAA AGCAAATTCT ACAGCTTTAT CTTAATACTG CGCCTTTTGG TGGAACGATT GAAGGAGTGC AGGCGGCAAG CTTTACCTAC TTAAATAAAT CGGCAAAAGA GCTTACTCAT GCGGAAGCTG CTTTACTGGC GGTTCTCCCA CAAGCACCTA CTCGATATCG TCCTGATTTA CATGCCTTAG CAGCTCAAAA AGCGAGAAAT AAGGTATTAC AAAGGCTTGC AGATTTTGAT GTATGGCCAC AAGAAATTGT GGATGATGCA ATGTTAGAGC AAGTTTTTAG CTTTAATTTT CGCCCTAAGC AATTAGCGCC ATTACTGGCT CGGCGGTTAT TGAATCATTC CAATGGTCAA TCGGTGGTAA AAAGCACTAT TGATAGTGAC TTGCAGCTGG CGTTACAAGA TTCACTTACC TCTTATATGA CAAGGTTACC TAAACAAAGC TCAGCGGCTA TTTTAGTGGT AGACAATAAA AACTCGGCAG TGAAGGCCTA TATTGGCACC GCTGATTTTG CTAATGCAGA GCGACATGGT TATGTCGATA TGGTGCAGGC CATCCGTTCT CCGGGGTCTA CCTTAAAACC GTTTATTTAT GGCTTAGCAT TAGATGAAGG CTTGATTCAT TCACATTCTT TACTGGCTGA TGTTCCGCGC AGTTGGGGGG ATTATCGCCC CAGTAATTTC AATGGTGCCT TTAATGGACC TGTGTCAGCG GCAGAAGCCT TGAAGCGTTC TCTCAATATG CCAGCAGTAG ATCTTTTAGA GCGCTATGGC GTTAATCGTT TTGTTGCGCA ATTAGAAAAT GCGGGTTTAA CCCTATCAAT TCCAGGTGGA AAACCCAACT TAGCCATTAT TTTAGGTGGC GCAGGAACCT CATTAGAACA ACTCGTTGAA AGTTATTCGG CTTTTGCTAA CCAAGGTAAA GTAAGTCAAT TACGCTTTTT ACAGAAAGAG TTAACACAAG ATAAGCAAAC ACGTAATTTA CTTTCCTCAG AGAGTGCTTG GGTGGTTCAA GAGCTCTTAG CTGGCATTGA ACGCCCTGGC AGTATTGATA CTTTTGCCTC GTCTTTACAA CAAGGAAAGA TGGCATGGAA AACAGGTACA AGTTACGGTT TTCGTGATTC TTGGGCAATC GGAGTAACCA AAGAATATAC CTTAGGCGTA TGGCTAGGTA GACCCGATGG CACCGCCATG CCAGGGCACT ATGGCAGTAT TAGTGCAGGG CCGTTATTAT TTAATGTTGC TGACCGTCTT AATTTGAATG CACAACAGAT CACAAAACCT GACAAGGTAA CGAAAGAGAC AATATGTTGG CCTTTAGGCA CCAGAAAAAG CGACAACCGA GCGAGTGATT GTCAGGAAGA TCACCAAGCG TGGATTATTG ACGATACTGT GCCGCCTACT TGGCATACCA GCGATGTAGA TGCATGGCAA AGTGGACTTT TTACCTTTTG GACTAATCCA GCAAACCAAT TGAGAGTTGC TATGGATTGC GCGACAGTGC CGAAAAAAGT TAACCATGTT GCTGTTTGGC CTAAGGTATT AGAGCCTTGG ATTAAGGTAA AACAACGACG ATTTACCTTG ATACCTATGC TTGACCCTAA GTGTGCTAGC CCAGATATAG CCTCAAGTGC GACCTTAAAA ATTACCGGTA TTGAAGAGGG CAGTATTTAT CGAAAGTCAG GGGATAAAGG CAAAATACCG AGCGTATGGT TAAAAAGCAT TGGCGGCTTA GGTACACACA ATTGGTATAT CAACGGCAAA CACAGTTATC AAATCAAGCC AAACCAAGGC AAAGAGCATT TATTATCAAC CATAGGTAAG CAGCAAATCA TAGTGCAAGA CCAGCAAGGT AACAGTGATA TGGTTACCCT GTATGTTGAG TAA
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Protein sequence | MIKQGLTTII RWCKHQRIVV FLALALFMSL AVLFTLDSLY PLNLPEKNNL FARVVVDEND RPLRSFADKN GIWRYPIKLH QVSPLYIDAL INYEDRWFWH HPGINPFSLL RATMQNVASN KIVSGGSTLS MQVARILHPH KRSLWGKTKQ VLRTLQLEWQ LDKKQILQLY LNTAPFGGTI EGVQAASFTY LNKSAKELTH AEAALLAVLP QAPTRYRPDL HALAAQKARN KVLQRLADFD VWPQEIVDDA MLEQVFSFNF RPKQLAPLLA RRLLNHSNGQ SVVKSTIDSD LQLALQDSLT SYMTRLPKQS SAAILVVDNK NSAVKAYIGT ADFANAERHG YVDMVQAIRS PGSTLKPFIY GLALDEGLIH SHSLLADVPR SWGDYRPSNF NGAFNGPVSA AEALKRSLNM PAVDLLERYG VNRFVAQLEN AGLTLSIPGG KPNLAIILGG AGTSLEQLVE SYSAFANQGK VSQLRFLQKE LTQDKQTRNL LSSESAWVVQ ELLAGIERPG SIDTFASSLQ QGKMAWKTGT SYGFRDSWAI GVTKEYTLGV WLGRPDGTAM PGHYGSISAG PLLFNVADRL NLNAQQITKP DKVTKETICW PLGTRKSDNR ASDCQEDHQA WIIDDTVPPT WHTSDVDAWQ SGLFTFWTNP ANQLRVAMDC ATVPKKVNHV AVWPKVLEPW IKVKQRRFTL IPMLDPKCAS PDIASSATLK ITGIEEGSIY RKSGDKGKIP SVWLKSIGGL GTHNWYINGK HSYQIKPNQG KEHLLSTIGK QQIIVQDQQG NSDMVTLYVE
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