Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3960 |
Symbol | nagZ1 |
ID | 3519477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4147119 |
End bp | 4149449 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286406 |
Product | beta-hexosaminidase |
Protein accession | YP_270618 |
Protein GI | 71278168 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAATAT CACTTTTTTT ATTATTGCTT ACTTTATCTG CGTCACCCTT TACCTCTGGC GCACAAAAAA GTGCACAGCA AAACGCGCTA TTCCCATATC CTCAACAAGT GAGTTGGGGA AAAGAAACCT TTACCTTTAA TAATGAAACT CAATTAATTT ATACCAATAA TGACGCTAAA AAAGTTGCTC ATTATTTTAG TGACTTCATA CAACCAGCCA CAGGATATTT GCCATCATTG TTGACTACAG AAGAAGCTAG GTTACAGTAT AAATTGGCTA ATTCGGCTAA TAAAATAGCG TTCTTACTGC TGGAAAAATC AAGTGAAGAA GCTGTTGAAG GTAGTTATCA TTTAACCATT GATGCCAACA AAGTCACGGC TAGTGCCAGT AGCGAAGTTG GTTTATTCTA CGCTGCGCAG ACCTTAAGGC AGTTATTCTC AAGTGATATA GAAAGCCGTA TGCCAATTAA TAAAGCGCAA TGGCTATTAC CTAGTGTTGA TATTATTGAT GCACCACGTT TCAAACATCG CGGTATGCAC TTAGATGTAA GCCGTCATTT TTTTGATGTT ACCTTTGTAA AACGTTATAT CGACTGGCTA GCATTTCATA AAATTAACTA TTTTCAATGG CACCTCACCG ATGATCAAGG TTGGCGTATT GAAATTAAGC AGTTTCCTAA ATTAACTTCG GTGGGCGGGC ATCGCGCACA AACGGTTGTC GGTCACACTT ACGATTATCA ATCAGTGTTT GATAATAAAT CCCATGGTGG TTTTTATACT CAGGCACAAA TTAAAGAGGT ATTGGCTTAT GCTAAAGAAC TTCATGTTGA GGTGATTCCA GAAGTGGGTG TACCGGGGCA TAGCACTGCA TTTTTAGCGG CTTACCCAGA ATATTCTTGC CATAAAAATC TGGTTAAGGT TGAGCAACGC TTTGGTATAT TTGAAGAAGT ACTTTGCCCT ACTGAGGATA CTTTTACTAT GCTTGCTAAA GTTTACCAAG AAGTTGCGAC TCTGTTCCCA TCAAAATATA TTCATATTGG TGGTGATGAG GTGATTAAAA AACAGTGGCT TGAAAGTGAC TTTGTACAAC AGTTGATGAA AGAGCAGGGC TTAACCAATG GAGAAGAGGT ACAAAGTTAC TTTATTAAAC GTGTTAGTCA AATCATCACC GGCTTAGATA AAACTCTTAT TGGCTGGGAT GAAATCATTG AAGGTGGTAT TGCCAAAGAC GCTGTGATTA TGTCGTGGCG CGGTATTGAA GGAGGTATTG CTTCAAGTGA AGCTGGACAT GATGTAATAA TGAGCCCTTA CCAATATACT TATTTAGATG CTTATCAATC GCGTTCAGTT GATGAACCTA AAGCCATTCA TGGTTACTTA CCCCTTAAAA TGGTTTATGG ATACGACCCA GTACCGGCAG ATTTATCACC ACAGCATCAA CAACATATTC TAGGTGCACA AGGGGCATTA TGGACAGAGT ACATTGAGAG TCCCCGCCAT GCGGAGTACA TGTTATTACC AAGGTTAAGT GCTTTAGCTG AAGTATTTTG GACACAACCG ACAAATAAAA ACTGGTCTCG TTATAGTGCT AATGTTGATC ATATTATTAC GCGATATCAG AAAATGGGGC TTAACCCAAG CACCAGTGCT TTTACCGCAA GCACTAAGAT TGACGTTGTA AAAAGTGGTG AATTAACCGT AAACTTAACA GCCGATATTG CGGGGAAGAA TATATTCTAT ACTATTGATG GTAGTGAACC CGCCCCCTAC AGTAAAGCAA CCTATTTATA TAAGAATGCC ATCACAGTAA CGCAGCCAGT GTTAATACGG GTGGCTGTCG AATCAGCCCA GGGAAGAACG CTTTTTAGTG AAGTGAATGT GGCGTTAGCG CCGCATAAAG CTTTAGGTAA AAAAATCAGT TTTGCTGCAC CTCCAAAAAC GGGTGAAGAA CGTTTATTAG ATGGCATTAT GGCTTACCAG CAGTATTACA ATGTTGATGA TTTTGCGGTG TTTTACGATG AGGATCTAGA TGCGATTATT GATTTTGAGC AGGCCACTGA GTTCAGTCAA GTGCAACTGG GCATTGATAC CGGTAAACAC AGGCAGTTGC AGCCTCCTGT GTCAGTTGAA GTGTTAGTTT CGAATGACGG CATTAATTGG CAATCATTAT TACGTTTAAC GCCAACTCAA ATTAAAGGGC CGTTATTAAC CTTAGACTTT GAGCAAGTAA AAATGCAATT TCTTCGTGTT ATTGCTATTA ATGCTAAGAA CTCTACTGAT CCACAAATAC CAAAACTTCC TTTATATATC GATGAGATTG CAGTCTATTA G
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Protein sequence | MKISLFLLLL TLSASPFTSG AQKSAQQNAL FPYPQQVSWG KETFTFNNET QLIYTNNDAK KVAHYFSDFI QPATGYLPSL LTTEEARLQY KLANSANKIA FLLLEKSSEE AVEGSYHLTI DANKVTASAS SEVGLFYAAQ TLRQLFSSDI ESRMPINKAQ WLLPSVDIID APRFKHRGMH LDVSRHFFDV TFVKRYIDWL AFHKINYFQW HLTDDQGWRI EIKQFPKLTS VGGHRAQTVV GHTYDYQSVF DNKSHGGFYT QAQIKEVLAY AKELHVEVIP EVGVPGHSTA FLAAYPEYSC HKNLVKVEQR FGIFEEVLCP TEDTFTMLAK VYQEVATLFP SKYIHIGGDE VIKKQWLESD FVQQLMKEQG LTNGEEVQSY FIKRVSQIIT GLDKTLIGWD EIIEGGIAKD AVIMSWRGIE GGIASSEAGH DVIMSPYQYT YLDAYQSRSV DEPKAIHGYL PLKMVYGYDP VPADLSPQHQ QHILGAQGAL WTEYIESPRH AEYMLLPRLS ALAEVFWTQP TNKNWSRYSA NVDHIITRYQ KMGLNPSTSA FTASTKIDVV KSGELTVNLT ADIAGKNIFY TIDGSEPAPY SKATYLYKNA ITVTQPVLIR VAVESAQGRT LFSEVNVALA PHKALGKKIS FAAPPKTGEE RLLDGIMAYQ QYYNVDDFAV FYDEDLDAII DFEQATEFSQ VQLGIDTGKH RQLQPPVSVE VLVSNDGINW QSLLRLTPTQ IKGPLLTLDF EQVKMQFLRV IAINAKNSTD PQIPKLPLYI DEIAVY
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