| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3958 |
|---|
| Symbol | |
|---|
| ID | 3520566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4145052 |
|---|
| End bp | 4146242 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286404 |
|---|
| Product | putative regulatory protein |
|---|
| Protein accession | YP_270616 |
|---|
| Protein GI | 71280103 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA TTGATATTAA AGAAAATAAG AACCCGGTTG AAAGCGCCCA GTTTGGCAAA
ACTCAAGATG AGCCATTAAG CGATAAAACA CATGTTCAAA TAAGTGATGA AGCAACTCAA
TGGTTGCTCA CTATTGAAGA AGATGACTCT GAGAACAATC AACAGGCATT AAACGCTTGG
TTATCTTTGA GTGCCCAGCA TAAAAAAGTG TATCAGCAAC TACAAACCCT TTGGGAAGTA
GCTGATGAGC TTCCCGTCGA TTTATTTAGT GAAGACTTAC TTGGGTTATC AATGACACCG
AGCTCTGCAG TAAATACTTC CTCCAGAGTT AATCCATATG CTTTAAAAAA AGAAAGTATT
TTGGCGAAAT TTATTTCCTT CTTCACCTTG AGAAAAACTA TGTATACGGC CAGTTTCGCC
AGTGTCATTT TTGCGACTTT TATTACATTT ACACAATATA ACCGCGAGAT GGTTACGACC
GATAAACCAT TACAAGTAGC AAGTTCAAGT ACCTTGCGTA CCAACGAATA TCAAACAAAG
TTAGGCGAGC ATAAAACTAT TACCGCACAA GACGGATCTA TTATTGTTTT AGCGGCTAAG
TCACAGGTGT TTATTGATTA CTCAGCTAAC CGTCGAGATA TTCATTTATT GTATGGAGAG
GCGCTTTTTA CTGTTGAAAA AGATAAAGAA AGACCTTTTA TTGTGCATAA TCATGGCCGT
AGCGTACAAG CGTTGGGTAC TATTTTTAAT GTCAGAGAGT CTAAAAGCGC GATGCAAGTT
TCAGTATTAG AGGGTATTGT TGAGGTGAAC GTTGAGCCAG AGGTTAAGTC TAAAGTAACT
AACAGTAGTG ACAAAAATCA AGTCGCTACC CTTGTGGCAG GGCAAGCACT TGAACTTGAT
AGCTTAGGTC AATTTTCAAC AACCTATGCG ATTGAGGTTA ATGAGCGTAT GGCATGGCAA
GATGGCCGAT TAAATTATGT TAATACTGAT TTAGCTAACG TGATTTTTGA TTTGAAACGC
TACTCTACTT TATCTATTCA TATACCCAAT AAACAGGTGG CTAACATGGG CTATACCGGT
AGCGTGATAT ACGATAAAGT GGATGACTGG TTAATTGCCC TACCTTATAT TTTTCCTGTT
GAGGTACAAC GTCACGGTAA TAGTGTCGTT ATCGTAAAAC GTAAGGAATA G
|
|---|
| Protein sequence | MKPIDIKENK NPVESAQFGK TQDEPLSDKT HVQISDEATQ WLLTIEEDDS ENNQQALNAW
LSLSAQHKKV YQQLQTLWEV ADELPVDLFS EDLLGLSMTP SSAVNTSSRV NPYALKKESI
LAKFISFFTL RKTMYTASFA SVIFATFITF TQYNREMVTT DKPLQVASSS TLRTNEYQTK
LGEHKTITAQ DGSIIVLAAK SQVFIDYSAN RRDIHLLYGE ALFTVEKDKE RPFIVHNHGR
SVQALGTIFN VRESKSAMQV SVLEGIVEVN VEPEVKSKVT NSSDKNQVAT LVAGQALELD
SLGQFSTTYA IEVNERMAWQ DGRLNYVNTD LANVIFDLKR YSTLSIHIPN KQVANMGYTG
SVIYDKVDDW LIALPYIFPV EVQRHGNSVV IVKRKE
|
|---|
| |