| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3915 |
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| Symbol | rluD |
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| ID | 3521018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4089983 |
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| End bp | 4090957 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286361 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_270573 |
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| Protein GI | 71280552 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAGAAA TCATCCAACA TCAAGATATC GTACCTGAAT CGTGTTTAGG TAAACGCTTT
GACCAATCAT TAGCGATAAT GTTTCCTGAT TATTCACGTT CGCGGATAAA AGATTGGATT
TTAGCCGGAC AAGTGAAAGT AAATGGAGAC GTTCTCCTCA TACCTCGTGA AAAAATGTAT
GGCGGCGAAG AGATTGATAT CAATGCAAAA GTTGAAGCTG AGATACGTTT TGAAGCACAA
AATATCCCGC TAAATATTGT TTATGAAGAT GACTATATTT TAGTGATAAA TAAACCAGCA
GGTTTAGTTG TTCACCCTGG TGCAGGTAAT CCGGATGGCA CATTGCTTAA TGCTTTGTTG
CATCATTACC CGGCTCTTAA TGTAGTTCCT AGAGCTGGTA TTGTGCATCG TCTTGATAAA
GATACTACTG GTTTAATGGT TGTAGCAAAG ACTATTGCAG CACAAACCAA CTTGGTTGAT
GCCTTACAAT TACGTGAGAT CACGCGCGAA TATGAAGCGG TGGCAAACGG TGTGATGACA
GCCGGCGGCT TAGTTGATGA GCCTATTGGA CGCCATTCTA CTAAGCGTAC CCAAATGGCA
GTCTCTTATA TTGGTCGACC TTCGGTAACA CATTACCGAG TTATGGAGAA ATATCGTTTA
CATACACGTT TACGTTTACG TTTAGAAACA GGTAGAACAC ACCAAATTCG TGTTCATATG
TCTCATATTA CGCATCCGTT AGTCGGTGAC CCTGTTTATG GCGGTCGTCC TCGTCCACCA
AAGAATTCAA CAGAAGCGTT ATTAATGAAG TTACGTAGCT TCAAGCGTCA AGCATTACAC
GCGGCTATGT TATCTTTATT CCATCCTATA ACAGGAGAGG AAATGACTTG GCATGCAGAA
CTACCTGAAG ACTTTGTTGA GCTAATTGAG CTTCTTCAAG AAGATAACAA GCTTAATGCT
CAAGACGAAT ACTAG
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| Protein sequence | MPEIIQHQDI VPESCLGKRF DQSLAIMFPD YSRSRIKDWI LAGQVKVNGD VLLIPREKMY
GGEEIDINAK VEAEIRFEAQ NIPLNIVYED DYILVINKPA GLVVHPGAGN PDGTLLNALL
HHYPALNVVP RAGIVHRLDK DTTGLMVVAK TIAAQTNLVD ALQLREITRE YEAVANGVMT
AGGLVDEPIG RHSTKRTQMA VSYIGRPSVT HYRVMEKYRL HTRLRLRLET GRTHQIRVHM
SHITHPLVGD PVYGGRPRPP KNSTEALLMK LRSFKRQALH AAMLSLFHPI TGEEMTWHAE
LPEDFVELIE LLQEDNKLNA QDEY
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